Aliases for BARX1-DT Gene

Data sources for BARX1-DT Gene:

Subcategory (RNA class) for BARX1-DT Gene

lncRNA

Aliases for BARX1-DT Gene

External Ids for BARX1-DT Gene

Previous HGNC Symbols for BARX1-DT Gene

  • BARX1-AS1

Summaries for BARX1-DT Gene

GeneCards Summary for BARX1-DT Gene

BARX1-DT (BARX1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for BARX1-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BARX1-DT Gene

Genomics for BARX1-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BARX1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J093954 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 256.1 -0.1 -116 2.6 ZEB1 ZNF341 KLF9 SP2 KLF16 CBX8 ZBTB21 SP7 PRDM4 L3MBTL2 BARX1-DT PTPDC1 BARX1 HSALNG0072871 HSALNG0072869 PHF2
GH09J093949 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 5.2 -4.9 -4906 2.6 IKZF1 ZNF217 ELF1 GABPB1 FOSL1 TCF7L2 JUND ZBTB40 MAX EGR1 HSALNG0072869 PTPDC1 BARX1-DT BARX1 HSALNG0072868 PHF2
GH09J093869 Enhancer 0.6 Ensembl CraniofacialAtlas 11.1 -85.8 -85755 1.1 PAX8 KDM1A MNT BARX1 BARX1-DT HSALNG0072863 piR-53063-266 PHF2
GH09J094110 Enhancer 1 Ensembl ENCODE 5.4 +155.6 155570 1.2 ARNT ZNF395 GTF2E2 NFATC3 ZEB2 TAL1 TAF9B NCOR1 FOSL1 PRDM6 MIRLET7A1 MIRLET7D MIRLET7F1 BARX1-DT piR-55361-580 HSALNG0072883 LOC107987099 PTPDC1
GH09J093685 Enhancer 0.4 Ensembl 11.1 -270.3 -270314 1 REST CTCF RAD21 BARX1 BARX1-DT HSALNG0072858 RF00017-7720 PHF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BARX1-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BARX1-DT Gene

Latest Assembly
chr9:93,955,415-93,981,876
(GRCh38/hg38)
Size:
26,462 bases
Orientation:
Plus strand

Previous Assembly
chr9:96,718,116-96,720,204
(GRCh37/hg19 by Entrez Gene)
Size:
2,089 bases
Orientation:
Plus strand

chr9:96,717,879-96,721,422
(GRCh37/hg19 by Ensembl)
Size:
3,544 bases
Orientation:
Plus strand

Genomic View for BARX1-DT Gene

Genes around BARX1-DT on UCSC Golden Path with GeneCards custom track
BARX1-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
BARX1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BARX1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BARX1-DT Gene

Proteins for BARX1-DT Gene

Post-translational modifications for BARX1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for BARX1-DT Gene

Domains & Families for BARX1-DT Gene

Gene Families for BARX1-DT Gene

genes like me logo Genes that share domains with BARX1-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BARX1-DT Gene

Function for BARX1-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BARX1-DT Gene

Localization for BARX1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BARX1-DT Gene

Pathways & Interactions for BARX1-DT Gene

PathCards logo

SuperPathways for BARX1-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for BARX1-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BARX1-DT Gene

Drugs & Compounds for BARX1-DT Gene

No Compound Related Data Available

Transcripts for BARX1-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for BARX1-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000355807_9606 lncRNA 1445 3

Ensembl: ENST00000453045 (view in UCSC) ,

LNCipedia: BARX1-DT:13,

NONCODE: NONHSAT133281.2,

URS0000314644_9606 lncRNA 307 3

Ensembl: ENST00000454594 (view in UCSC) ,

LNCipedia: BARX1-DT:12,

NONCODE: NONHSAT133280.2,

URS0000A766B2_9606 lncRNA 1445 1

RefSeq: NR_144455,

URS0000D5A936_9606 lncRNA 1754 2

LncBook: HSALNT0152317,

LNCipedia: BARX1-DT:8,

URS0000D5C821_9606 lncRNA 377 2

LncBook: HSALNT0152316,

LNCipedia: BARX1-DT:9,

BARX1-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for BARX1-DT Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for BARX1-DT Gene

No ASD Table

Relevant External Links for BARX1-DT Gene

GeneLoc Exon Structure for
BARX1-DT

Expression for BARX1-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for BARX1-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BARX1-DT Gene

Orthologs for BARX1-DT Gene

Evolution for BARX1-DT Gene

ENSEMBL:
Gene Tree for BARX1-DT (if available)
TreeFam:
Gene Tree for BARX1-DT (if available)

No data available for Orthologs for BARX1-DT Gene

Paralogs for BARX1-DT Gene

No data available for Paralogs for BARX1-DT Gene

Variants for BARX1-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for BARX1-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for BARX1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BARX1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BARX1-DT Gene

Disorders for BARX1-DT Gene

Additional Disease Information for BARX1-DT

No disorders were found for BARX1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BARX1-DT Gene

Publications for BARX1-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for BARX1-DT Gene

Sources for BARX1-DT Gene