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Aliases for BARX1-DT Gene

Subcategory (RNA class) for BARX1-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for BARX1-DT Gene

  • BARX1 Divergent Transcript 2 3
  • BARX1 Antisense RNA 1 (Head To Head) 2 3 5
  • BARX1-AS1 3 5

External Ids for BARX1-DT Gene

Previous HGNC Symbols for BARX1-DT Gene

  • BARX1-AS1

Summaries for BARX1-DT Gene

GeneCards Summary for BARX1-DT Gene

BARX1-DT (BARX1 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BARX1-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BARX1-DT Gene

Genomics for BARX1-DT Gene

GeneHancer (GH) Regulatory Elements for BARX1-DT Gene

Promoters and enhancers for BARX1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J093954 Promoter/Enhancer 1.4 EPDnew ENCODE dbSUPER 656.2 +0.2 182 1.6 KLF1 ZNF777 ZBTB21 SUZ12 KLF17 ZEB1 HIC1 ZNF335 ZFHX2 GLIS2 BARX1-DT PTPDC1 BARX1 PIR58475
GH09J093949 Enhancer 1.1 Ensembl ENCODE dbSUPER 6.2 -4.2 -4156 4.5 CTCF ESRRA USF1 SUZ12 JUN MAX ZBTB40 FOSL1 ELK1 POLR2A PTPDC1 BARX1-DT BARX1 ENSG00000231990
GH09J093944 Enhancer 0.7 dbSUPER 6.3 -9.9 -9890 3.1 CTCF MXI1 USF1 L3MBTL2 ZNF189 SUZ12 NRF1 MAX SIN3A RAD21 PTPDC1 BARX1-DT BARX1 ENSG00000231990
GH09J094110 Enhancer 0.8 ENCODE 5.4 +155.5 155453 1 HDAC1 ATF1 PKNOX1 TAF9B ARNT NCOA2 TCF12 GATA2 ATF7 CEBPB MIRLET7A1 MIRLET7D MIRLET7F1 BARX1-DT ENSG00000269946 CYCSP24
GH09J093959 Enhancer 0.7 ENCODE dbSUPER 6.1 +3.8 3797 0.2 POLR2A SUZ12 MAX EBF1 MYC EZH2 BARX1-DT PTPDC1 PIR58475
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BARX1-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for BARX1-DT Gene

Genomic Locations for BARX1-DT Gene
chr9:93,955,597-93,959,140
(GRCh38/hg38)
Size:
3,544 bases
Orientation:
Plus strand
chr9:96,717,879-96,721,422
(GRCh37/hg19)

Genomic View for BARX1-DT Gene

Genes around BARX1-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BARX1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BARX1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BARX1-DT Gene

Function for BARX1-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BARX1-DT Gene

Localization for BARX1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BARX1-DT Gene

Pathways & Interactions for BARX1-DT Gene

SuperPathways for BARX1-DT Gene

No Data Available

Interacting Proteins for BARX1-DT Gene

Gene Ontology (GO) - Biological Process for BARX1-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BARX1-DT Gene

Drugs & Compounds for BARX1-DT Gene

No Compound Related Data Available

Transcripts for BARX1-DT Gene

mRNA/cDNA for BARX1-DT Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for BARX1-DT Gene

No ASD Table

Relevant External Links for BARX1-DT Gene

GeneLoc Exon Structure for
BARX1-DT
ECgene alternative splicing isoforms for
BARX1-DT

Expression for BARX1-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BARX1-DT Gene

Orthologs for BARX1-DT Gene

Evolution for BARX1-DT Gene

ENSEMBL:
Gene Tree for BARX1-DT (if available)
TreeFam:
Gene Tree for BARX1-DT (if available)

No data available for Orthologs for BARX1-DT Gene

Paralogs for BARX1-DT Gene

No data available for Paralogs for BARX1-DT Gene

Variants for BARX1-DT Gene

Additional Variant Information for BARX1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BARX1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BARX1-DT Gene

Disorders for BARX1-DT Gene

Additional Disease Information for BARX1-DT

No disorders were found for BARX1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BARX1-DT Gene

Publications for BARX1-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for BARX1-DT Gene

Sources for BARX1-DT Gene

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