Aliases for BARHL2 Gene

Aliases for BARHL2 Gene

  • BarH Like Homeobox 2 2 3 5
  • BarH-Like 2 Homeobox Protein 3 4
  • BarH (Drosophila)-Like 2 2
  • BarH-Like Homeobox 2 2
  • BARHL2 5

External Ids for BARHL2 Gene

Previous GeneCards Identifiers for BARHL2 Gene

  • GC01U990337
  • GC01M090353
  • GC01M090514
  • GC01M090889
  • GC01M091177
  • GC01M089296

Summaries for BARHL2 Gene

GeneCards Summary for BARHL2 Gene

BARHL2 (BarH Like Homeobox 2) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include DNA-binding transcription factor activity and proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific. An important paralog of this gene is BARHL1.

UniProtKB/Swiss-Prot Summary for BARHL2 Gene

Additional gene information for BARHL2 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BARHL2 Gene

Genomics for BARHL2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BARHL2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J090717 Promoter/Enhancer 1.2 FANTOM5 Ensembl 656.8 -1.0 -977 1 ZNF629 PRDM1 ZIC2 PKNOX1 PATZ1 ZNF501 EZH2 ZNF341 SP2 ZNF639 BARHL2 ENSG00000287076 lnc-ZNF326-6 RF00104-001 ZNF644
GH01J090957 Enhancer 1 Ensembl ENCODE 10.7 -242.4 -242399 9 CEBPG GATAD2A ATF7 RCOR2 PRDM1 SOX6 FOXJ2 CEBPA SOX13 CEBPB BARHL2 ZNF644 piR-58852-003 MN308749 lnc-BARHL2-5
GH01J090828 Enhancer 0.4 UCNEbase 10.9 -111.7 -111667 0.4 DACH1 BARHL2 LINC01763 RF00104-001 LINC02609 ZNF644
GH01J090759 Enhancer 0.3 UCNEbase 11.7 -42.4 -42417 0.4 BARHL2 ENSG00000287076 lnc-ZNF326-6 RF00104-001 ZNF644
GH01J090965 Enhancer 0.3 Ensembl 10.7 -247.9 -247899 0.4 HLF CTCF BARHL2 piR-58852-003 MN308749 ZNF644 lnc-BARHL2-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BARHL2 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for BARHL2

Top Transcription factor binding sites by QIAGEN in the BARHL2 gene promoter:
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • NRSF form 1
  • NRSF form 2

Genomic Locations for BARHL2 Gene

Genomic Locations for BARHL2 Gene
chr1:90,711,539-90,717,302
(GRCh38/hg38)
Size:
5,764 bases
Orientation:
Minus strand
chr1:91,177,096-91,182,794
(GRCh37/hg19)
Size:
5,699 bases
Orientation:
Minus strand

Genomic View for BARHL2 Gene

Genes around BARHL2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BARHL2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BARHL2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BARHL2 Gene

Proteins for BARHL2 Gene

  • Protein details for BARHL2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NY43-BARH2_HUMAN
    Recommended name:
    BarH-like 2 homeobox protein
    Protein Accession:
    Q9NY43
    Secondary Accessions:
    • A0AVP2
    • Q7Z4N7

    Protein attributes for BARHL2 Gene

    Size:
    387 amino acids
    Molecular mass:
    41981 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BARHL2 Gene

Post-translational modifications for BARHL2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for BARHL2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for BARHL2 Gene

Domains & Families for BARHL2 Gene

Gene Families for BARHL2 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for BARHL2 Gene

InterPro:
Blocks:
  • Lambda and other repressor helix-turn-helix signature
ProtoNet:

Suggested Antigen Peptide Sequences for BARHL2 Gene

GenScript: Design optimal peptide antigens:
  • BarH-like 2 homeobox protein (BARH2_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q9NY43

UniProtKB/Swiss-Prot:

BARH2_HUMAN :
  • Belongs to the BAR homeobox family.
Family:
  • Belongs to the BAR homeobox family.
genes like me logo Genes that share domains with BARHL2: view

Function for BARHL2 Gene

Molecular function for BARHL2 Gene

UniProtKB/Swiss-Prot Function:
Potential regulator of neural basic helix-loop-helix genes.

Phenotypes From GWAS Catalog for BARHL2 Gene

Gene Ontology (GO) - Molecular Function for BARHL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA 21873635
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific ISM 19274049
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific IEA,IBA 21873635
GO:0003677 DNA binding IEA --
GO:0003700 DNA-binding transcription factor activity IEA --
genes like me logo Genes that share ontologies with BARHL2: view
genes like me logo Genes that share phenotypes with BARHL2: view

Animal Models for BARHL2 Gene

MGI Knock Outs for BARHL2:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for BARHL2

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for BARHL2 Gene

Localization for BARHL2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BARHL2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BARHL2 gene
Compartment Confidence
nucleus 5
cytosol 2
plasma membrane 1
extracellular 1
cytoskeleton 1

Gene Ontology (GO) - Cellular Components for BARHL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000790 nuclear chromatin ISA --
GO:0005634 nucleus IBA 21873635
genes like me logo Genes that share ontologies with BARHL2: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for BARHL2 Gene

Pathways & Interactions for BARHL2 Gene

PathCards logo

SuperPathways for BARHL2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BARHL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001709 cell fate determination IEA --
GO:0001764 neuron migration IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006357 regulation of transcription by RNA polymerase II IEA,IBA 21873635
GO:0007399 nervous system development IEA --
genes like me logo Genes that share ontologies with BARHL2: view

No data available for Pathways by source and SIGNOR curated interactions for BARHL2 Gene

Drugs & Compounds for BARHL2 Gene

No Compound Related Data Available

Transcripts for BARHL2 Gene

mRNA/cDNA for BARHL2 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for BARHL2

Alternative Splicing Database (ASD) splice patterns (SP) for BARHL2 Gene

No ASD Table

Relevant External Links for BARHL2 Gene

GeneLoc Exon Structure for
BARHL2

Expression for BARHL2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BARHL2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for BARHL2 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x25.1) and Brain - Cerebellum (x24.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for BARHL2

SOURCE GeneReport for Unigene cluster for BARHL2 Gene:

Hs.451956

Evidence on tissue expression from TISSUES for BARHL2 Gene

  • Nervous system(3.2)
genes like me logo Genes that share expression patterns with BARHL2: view

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for BARHL2 Gene

Orthologs for BARHL2 Gene

This gene was present in the common ancestor of animals.

Orthologs for BARHL2 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia BARHL2 30 31
  • 97.42 (n)
OneToOne
Dog
(Canis familiaris)
Mammalia BARHL2 30 31
  • 92.69 (n)
OneToOne
Cow
(Bos Taurus)
Mammalia BARHL2 30 31
  • 90.44 (n)
OneToOne
Rat
(Rattus norvegicus)
Mammalia Barhl2 30
  • 89.41 (n)
Mouse
(Mus musculus)
Mammalia Barhl2 30 17 31
  • 88.98 (n)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia BARHL2 31
  • 87 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia BARHL2 31
  • 84 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia -- 31
  • 64 (a)
OneToMany
Tropical Clawed Frog
(Silurana tropicalis)
Amphibia barhl2 30
  • 75.05 (n)
African clawed frog
(Xenopus laevis)
Amphibia LOC398182 30
Zebrafish
(Danio rerio)
Actinopterygii barhl2 30 31
  • 71.99 (n)
OneToOne
Dr.16934 30
Fruit Fly
(Drosophila melanogaster)
Insecta CG11085 31
  • 25 (a)
OneToMany
Worm
(Caenorhabditis elegans)
Secernentea ceh-30 31
  • 35 (a)
ManyToMany
ceh-31 31
  • 31 (a)
ManyToMany
Sea Squirt
(Ciona savignyi)
Ascidiacea -- 31
  • 41 (a)
OneToMany
Species where no ortholog for BARHL2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)

Evolution for BARHL2 Gene

ENSEMBL:
Gene Tree for BARHL2 (if available)
TreeFam:
Gene Tree for BARHL2 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for BARHL2: view image

Paralogs for BARHL2 Gene

Paralogs for BARHL2 Gene

(2) SIMAP similar genes for BARHL2 Gene using alignment to 1 proteins:

  • BARH2_HUMAN
genes like me logo Genes that share paralogs with BARHL2: view

Variants for BARHL2 Gene

Additional dbSNP identifiers (rs#s) for BARHL2 Gene

Structural Variations from Database of Genomic Variants (DGV) for BARHL2 Gene

Variant ID Type Subtype PubMed ID
nsv950204 CNV deletion 24416366

Variation tolerance for BARHL2 Gene

Residual Variation Intolerance Score: 37.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.26; 25.20% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for BARHL2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BARHL2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for BARHL2 Gene

Disorders for BARHL2 Gene

Additional Disease Information for BARHL2

No disorders were found for BARHL2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BARHL2 Gene

Publications for BARHL2 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  2. Role of the Barhl2 homeobox gene in the specification of glycinergic amacrine cells. (PMID: 14998930) Mo Z … Xiang M (Development (Cambridge, England) 2004) 2 3
  3. Barhl1, a gene belonging to a new subfamily of mammalian homeobox genes, is expressed in migrating neurons of the CNS. (PMID: 10814725) Bulfone A … Banfi S (Human molecular genetics 2000) 3 4
  4. A reference map of the human binary protein interactome. (PMID: 32296183) Luck K … Calderwood MA (Nature 2020) 3
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3

Products for BARHL2 Gene

Sources for BARHL2 Gene