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Aliases for BAIAP2-DT Gene

Subcategory (RNA class) for BAIAP2-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for BAIAP2-DT Gene

  • BAIAP2 Divergent Transcript 2 3
  • BAIAP2 Antisense RNA 1 (Head To Head) 2 3 5
  • BAIAP2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • BAIAP2-AS1 3 5
  • BAIAP2 Antisense RNA 1 2

External Ids for BAIAP2-DT Gene

Previous HGNC Symbols for BAIAP2-DT Gene

  • BAIAP2-AS1

Summaries for BAIAP2-DT Gene

GeneCards Summary for BAIAP2-DT Gene

BAIAP2-DT (BAIAP2 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with BAIAP2-DT include Cervical Squamous Cell Carcinoma and Hepatocellular Carcinoma.

Additional gene information for BAIAP2-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BAIAP2-DT Gene

Genomics for BAIAP2-DT Gene

GeneHancer (GH) Regulatory Elements for BAIAP2-DT Gene

Promoters and enhancers for BAIAP2-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J081025 Enhancer 0.7 ENCODE dbSUPER 11.1 +9.2 9205 1.3 NFIL3 HLF CEBPA CEBPG HNF4A FOXP1 ENSG00000262098 GC17P081024 PIR46004 BAIAP2-DT
GH17J081027 Enhancer 0.5 dbSUPER 6.2 +6.8 6786 1.8 MITF ZFHX2 EGR1 HLF ZBTB33 ZIC2 EGR2 PIR46004 BAIAP2-DT PIR40680
GH17J081032 Enhancer 0.2 dbSUPER 14.4 +2.9 2860 0.8 PIR38376 PIR36888 PIR40680 BAIAP2-DT
GH17J081033 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.7 -4.9 -4888 13.5 HDGF PKNOX1 CLOCK FOXA2 MLX ARNT ARID4B NEUROD1 SIN3A SLC30A9 BAIAP2 EIF4A3 HGS TEPSIN FAAP100 ACTG1 CEP131 ARHGDIA ALYREF SGSH
GH17J081031 Enhancer 0.8 ENCODE dbSUPER 0.7 +3.6 3575 0.1 RXRA MAX REST RAD21 GABPA YY1 NR2F2 SP1 EGR1 HNF4A PIR38376 PIR36888 PIR40680 BAIAP2-DT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BAIAP2-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for BAIAP2-DT Gene

Genomic Locations for BAIAP2-DT Gene
chr17:81,029,130-81,034,881
(GRCh38/hg38)
Size:
5,752 bases
Orientation:
Minus strand
chr17:79,002,933-79,008,519
(GRCh37/hg19)

Genomic View for BAIAP2-DT Gene

Genes around BAIAP2-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BAIAP2-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BAIAP2-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BAIAP2-DT Gene

Proteins for BAIAP2-DT Gene

Post-translational modifications for BAIAP2-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for BAIAP2-DT Gene

Domains & Families for BAIAP2-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BAIAP2-DT Gene

Function for BAIAP2-DT Gene

Phenotypes for BAIAP2-DT Gene

genes like me logo Genes that share phenotypes with BAIAP2-DT: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BAIAP2-DT Gene

Localization for BAIAP2-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BAIAP2-DT Gene

Pathways & Interactions for BAIAP2-DT Gene

SuperPathways for BAIAP2-DT Gene

No Data Available

Interacting Proteins for BAIAP2-DT Gene

Gene Ontology (GO) - Biological Process for BAIAP2-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BAIAP2-DT Gene

Drugs & Compounds for BAIAP2-DT Gene

No Compound Related Data Available

Transcripts for BAIAP2-DT Gene

mRNA/cDNA for BAIAP2-DT Gene

(60) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BAIAP2-DT Gene

No ASD Table

Relevant External Links for BAIAP2-DT Gene

GeneLoc Exon Structure for
BAIAP2-DT
ECgene alternative splicing isoforms for
BAIAP2-DT

Expression for BAIAP2-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BAIAP2-DT Gene

Orthologs for BAIAP2-DT Gene

Evolution for BAIAP2-DT Gene

ENSEMBL:
Gene Tree for BAIAP2-DT (if available)
TreeFam:
Gene Tree for BAIAP2-DT (if available)

No data available for Orthologs for BAIAP2-DT Gene

Paralogs for BAIAP2-DT Gene

No data available for Paralogs for BAIAP2-DT Gene

Variants for BAIAP2-DT Gene

Sequence variations from dbSNP and Humsavar for BAIAP2-DT Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000910255 -- 81,036,703(-) T/A upstream_transcript_variant
rs1000965354 -- 81,036,518(-) C/T upstream_transcript_variant
rs1001022248 -- 81,032,069(-) T/A non_coding_transcript_variant
rs1001437171 -- 81,033,165(-) AGAAGAA/AGAA non_coding_transcript_variant
rs1001888353 -- 81,033,437(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for BAIAP2-DT Gene

Variant ID Type Subtype PubMed ID
dgv3292n100 CNV gain 25217958
esv26223 CNV gain+loss 19812545
nsv1072760 CNV deletion 25765185
nsv1133415 CNV deletion 24896259
nsv470619 CNV loss 18288195
nsv576169 CNV loss 21841781
nsv828128 CNV loss 20364138
nsv833564 CNV loss 17160897
nsv952388 CNV deletion 24416366

Additional Variant Information for BAIAP2-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BAIAP2-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BAIAP2-DT Gene

Disorders for BAIAP2-DT Gene

MalaCards: The human disease database

(2) MalaCards diseases for BAIAP2-DT Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
cervical squamous cell carcinoma
  • squamous cell carcinoma of cervix
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for BAIAP2-DT

genes like me logo Genes that share disorders with BAIAP2-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BAIAP2-DT Gene

Publications for BAIAP2-DT Gene

  1. Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. (PMID: 16303743) Otsuki T … Isogai T (DNA research : an international journal for rapid publication of reports on genes and genomes 2005) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for BAIAP2-DT Gene

Sources for BAIAP2-DT Gene

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