Aliases for BAIAP2-DT Gene

Data sources for BAIAP2-DT Gene:

RNA type for BAIAP2-DT Gene

lncRNA

Aliases for BAIAP2-DT Gene

External Ids for BAIAP2-DT Gene

Previous HGNC Symbols for BAIAP2-DT Gene

  • BAIAP2-AS1

Previous GeneCards Identifiers for BAIAP2-DT Gene

  • GC17M081035
  • GC17M081036
  • GC17M081037
  • GC17M081042
  • GC17M081032
  • GC17M081034
  • GC17M081048
  • GC17M081053

Summaries for BAIAP2-DT Gene

GeneCards Summary for BAIAP2-DT Gene

BAIAP2-DT (BAIAP2 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with BAIAP2-DT include Cervical Squamous Cell Carcinoma and Hepatocellular Carcinoma.

Additional gene information for BAIAP2-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BAIAP2-DT Gene

Genomics for BAIAP2-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for BAIAP2-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BAIAP2-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for BAIAP2-DT Gene

Latest Assembly
chr17:81,028,741-81,034,891
(GRCh38/hg38)
Size:
6,151 bases
Orientation:
Minus strand

Previous Assembly
chr17:79,002,933-79,008,519
(GRCh37/hg19 by Entrez Gene)
Size:
5,587 bases
Orientation:
Minus strand

chr17:79,002,933-79,008,501
(GRCh37/hg19 by Ensembl)
Size:
5,569 bases
Orientation:
Minus strand

Genomic View for BAIAP2-DT Gene

Genes around BAIAP2-DT on UCSC Golden Path with GeneCards custom track
BAIAP2-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
BAIAP2-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BAIAP2-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BAIAP2-DT Gene

Proteins for BAIAP2-DT Gene

Post-translational modifications for BAIAP2-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for BAIAP2-DT Gene

Domains & Families for BAIAP2-DT Gene

Gene Families for BAIAP2-DT Gene

genes like me logo Genes that share domains with BAIAP2-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BAIAP2-DT Gene

Function for BAIAP2-DT Gene

Phenotypes From GWAS Catalog for BAIAP2-DT Gene

genes like me logo Genes that share phenotypes with BAIAP2-DT: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BAIAP2-DT Gene

Localization for BAIAP2-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BAIAP2-DT Gene

Pathways & Interactions for BAIAP2-DT Gene

PathCards logo

SuperPathways for BAIAP2-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for BAIAP2-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BAIAP2-DT Gene

Drugs & Compounds for BAIAP2-DT Gene

No Compound Related Data Available

Transcripts for BAIAP2-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for BAIAP2-DT Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000811DD3_9606 lncRNA 4467 2

Ensembl: ENST00000577066 (view in UCSC) ,

LNCipedia: BAIAP2-DT:27,

URS000075BF56_9606 lncRNA 4423 2

RefSeq: NR_026857,

LNCipedia: BAIAP2-DT:21,

URS0000764FC3_9606 lncRNA 4016 2

Ensembl: ENST00000573167 (view in UCSC) ,

LNCipedia: BAIAP2-DT:17,

URS00008BC0C5_9606 lncRNA 1230 3

LncBook: HSALNT0246142,

LNCipedia: BAIAP2-DT:19,

NONCODE: NONHSAT056430.2,

URS00008B2FAD_9606 lncRNA 4586 2

LNCipedia: BAIAP2-DT:16,

NONCODE: NONHSAT056426.2,

BAIAP2-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for BAIAP2-DT Gene

1 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for BAIAP2-DT Gene

No ASD Table

Relevant External Links for BAIAP2-DT Gene

GeneLoc Exon Structure for
BAIAP2-DT

Expression for BAIAP2-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for BAIAP2-DT

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BAIAP2-DT Gene

Orthologs for BAIAP2-DT Gene

Evolution for BAIAP2-DT Gene

ENSEMBL:
Gene Tree for BAIAP2-DT (if available)
TreeFam:
Gene Tree for BAIAP2-DT (if available)
Alliance of Genome Resources:
Additional Orthologs for BAIAP2-DT

No data available for Orthologs for BAIAP2-DT Gene

Paralogs for BAIAP2-DT Gene

No data available for Paralogs for BAIAP2-DT Gene

Variants for BAIAP2-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for BAIAP2-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for BAIAP2-DT Gene

Variant ID Type Subtype PubMed ID
dgv3292n100 CNV gain 25217958
esv26223 CNV gain+loss 19812545
nsv1072760 CNV deletion 25765185
nsv1133415 CNV deletion 24896259
nsv470619 CNV loss 18288195
nsv576169 CNV loss 21841781
nsv828128 CNV loss 20364138
nsv833564 CNV loss 17160897
nsv952388 CNV deletion 24416366

Additional Variant Information for BAIAP2-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BAIAP2-DT
Leiden Open Variation Database (LOVD)
BAIAP2-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for BAIAP2-DT Gene

Disorders for BAIAP2-DT Gene

MalaCards: The human disease database

(2) MalaCards diseases for BAIAP2-DT Gene - From: LNC, COP, and GCD

Disorder Aliases PubMed IDs
cervical squamous cell carcinoma
  • squamous cell carcinoma of cervix
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for BAIAP2-DT

genes like me logo Genes that share disorders with BAIAP2-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BAIAP2-DT Gene

Publications for BAIAP2-DT Gene

  1. The long noncoding RNA ROCKI regulates inflammatory gene expression. (PMID: 30918008) Zhang Q … Rana TM (The EMBO journal 2019) 2 3
  2. A 15-long non-coding RNA signature to improve prognosis prediction of cervical squamous cell carcinoma. (PMID: 29525275) Mao X … Xing H (Gynecologic oncology 2018) 72
  3. Comprehensive analysis of long non-coding RNA expression profiles in hepatitis B virus-related hepatocellular carcinoma. (PMID: 27285756) Gong X … Yu C (Oncotarget 2016) 72
  4. Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma. (PMID: 26492393) Zhang J … Lai PB (PloS one 2015) 72
  5. Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. (PMID: 16303743) Otsuki T … Isogai T (DNA research : an international journal for rapid publication of reports on genes and genomes 2005) 3

Products for BAIAP2-DT Gene

Sources for BAIAP2-DT Gene