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Aliases for BAHCC1 Gene

Aliases for BAHCC1 Gene

  • BAH Domain And Coiled-Coil Containing 1 2 3 5
  • Bromo Adjacent Homology Domain-Containing Protein 2 3 4
  • BAH Domain-Containing Protein 2 3 4
  • BAHD2 3 4
  • BAH And Coiled-Coil Domain-Containing Protein 1 3
  • KIAA1447 4

External Ids for BAHCC1 Gene

Previous GeneCards Identifiers for BAHCC1 Gene

  • GC17P076989
  • GC17P079373
  • GC17P074814

Summaries for BAHCC1 Gene

GeneCards Summary for BAHCC1 Gene

BAHCC1 (BAH Domain And Coiled-Coil Containing 1) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include chromatin binding. An important paralog of this gene is TNRC18.

Additional gene information for BAHCC1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BAHCC1 Gene

Genomics for BAHCC1 Gene

GeneHancer (GH) Regulatory Elements for BAHCC1 Gene

Promoters and enhancers for BAHCC1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J081384 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE dbSUPER 653.8 +0.6 640 22.4 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF263 BAHCC1 ENSG00000279692 ENSG00000262877 CEP131 HGS FAAP100 ENSG00000265678 CCDC57 ARL16 RFNG
GH17J081336 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 3 -53.5 -53521 10.8 PKNOX1 SMAD1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 GC17P081340 GC17M081340 FAAP100 HGS CEP131 RFNG ENSG00000265678 TMEM105 DUS1L CCDC57
GH17J081481 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE 3 +86.1 86120 1 RB1 SIN3A ZNF766 FOS ATF7 SMAD5 NFYC REST GATAD2B ZNF592 LINC01971 NPB ENSG00000265678 AATK BAHCC1 PIR46680 GC17M081518
GH17J081482 Enhancer 1.5 FANTOM5 Ensembl ENCODE 1.7 +88.3 88267 2.9 HDGF ARNT ARID4B SIN3A ZNF2 ZBTB7B YY1 ZNF213 ZNF207 ZNF143 CEP131 HGS ENSG00000265678 CCDC57 FAAP100 CSNK1D NARF-IT1 RFNG HEXDC TEPSIN
GH17J081425 Enhancer 0.7 FANTOM5 1.5 +30.4 30405 0.1 ZNF146 YBX1 SALL2 ZNF155 HIC1 ATF7 EGR2 IRF5 ATF2 ZBTB7A ENSG00000262877 FAAP100 OGFOD3 ENSG00000265678 ENSG00000260011 CSNK1D CD7 LOC100130370 HGS ENSG00000260369
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BAHCC1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the BAHCC1 gene promoter:

Genomic Locations for BAHCC1 Gene

Genomic Locations for BAHCC1 Gene
chr17:81,395,464-81,466,332
(GRCh38/hg38)
Size:
70,869 bases
Orientation:
Plus strand
chr17:79,373,540-79,433,358
(GRCh37/hg19)

Genomic View for BAHCC1 Gene

Genes around BAHCC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BAHCC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BAHCC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BAHCC1 Gene

Proteins for BAHCC1 Gene

  • Protein details for BAHCC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P281-BAHC1_HUMAN
    Recommended name:
    BAH and coiled-coil domain-containing protein 1
    Protein Accession:
    Q9P281
    Secondary Accessions:
    • A0A075B747
    • Q5U629

    Protein attributes for BAHCC1 Gene

    Size:
    2639 amino acids
    Molecular mass:
    280016 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BAHCC1 Gene

Post-translational modifications for BAHCC1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for BAHCC1 Gene

No data available for DME Specific Peptides for BAHCC1 Gene

Domains & Families for BAHCC1 Gene

Gene Families for BAHCC1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for BAHCC1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for BAHCC1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BAHCC1: view

No data available for UniProtKB/Swiss-Prot for BAHCC1 Gene

Function for BAHCC1 Gene

Phenotypes From GWAS Catalog for BAHCC1 Gene

Gene Ontology (GO) - Molecular Function for BAHCC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000976 transcription regulatory region sequence-specific DNA binding IBA --
GO:0003682 chromatin binding IBA --
genes like me logo Genes that share ontologies with BAHCC1: view
genes like me logo Genes that share phenotypes with BAHCC1: view

Animal Models for BAHCC1 Gene

MGI Knock Outs for BAHCC1:

Animal Model Products

CRISPR Products

miRNA for BAHCC1 Gene

miRTarBase miRNAs that target BAHCC1

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for BAHCC1

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for BAHCC1 Gene

Localization for BAHCC1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BAHCC1 gene
Compartment Confidence
nucleus 5
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for BAHCC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000785 chromatin IBA --
GO:0005654 nucleoplasm IBA --
GO:0005677 chromatin silencing complex IBA --
genes like me logo Genes that share ontologies with BAHCC1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for BAHCC1 Gene

Pathways & Interactions for BAHCC1 Gene

SuperPathways for BAHCC1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BAHCC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006342 chromatin silencing IBA --
GO:0031507 heterochromatin assembly IBA --
genes like me logo Genes that share ontologies with BAHCC1: view

No data available for Pathways by source and SIGNOR curated interactions for BAHCC1 Gene

Drugs & Compounds for BAHCC1 Gene

No Compound Related Data Available

Transcripts for BAHCC1 Gene

Unigene Clusters for BAHCC1 Gene

BAH domain and coiled-coil containing 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for BAHCC1

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BAHCC1 Gene

No ASD Table

Relevant External Links for BAHCC1 Gene

GeneLoc Exon Structure for
BAHCC1
ECgene alternative splicing isoforms for
BAHCC1

Expression for BAHCC1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BAHCC1 Gene

Protein differential expression in normal tissues from HIPED for BAHCC1 Gene

This gene is overexpressed in Urine (45.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for BAHCC1 Gene



NURSA nuclear receptor signaling pathways regulating expression of BAHCC1 Gene:

BAHCC1

SOURCE GeneReport for Unigene cluster for BAHCC1 Gene:

Hs.514580

Evidence on tissue expression from TISSUES for BAHCC1 Gene

  • Pancreas(4.2)
  • Nervous system(4.2)
genes like me logo Genes that share expression patterns with BAHCC1: view

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for BAHCC1 Gene

Orthologs for BAHCC1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for BAHCC1 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia BAHCC1 33
  • 84.68 (n)
mouse
(Mus musculus)
Mammalia Bahcc1 16 33
  • 82.26 (n)
rat
(Rattus norvegicus)
Mammalia Bahcc1 33
  • 81.27 (n)
chicken
(Gallus gallus)
Aves BAHCC1 33
  • 73.32 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia bahcc1 33
  • 60.21 (n)
Str.7251 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.9298 33
zebrafish
(Danio rerio)
Actinopterygii bahcc1 33
  • 54.82 (n)
Species where no ortholog for BAHCC1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BAHCC1 Gene

ENSEMBL:
Gene Tree for BAHCC1 (if available)
TreeFam:
Gene Tree for BAHCC1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for BAHCC1: view image

Paralogs for BAHCC1 Gene

Paralogs for BAHCC1 Gene

(1) SIMAP similar genes for BAHCC1 Gene using alignment to 3 proteins:

  • BAHC1_HUMAN
  • F8WBW8_HUMAN
  • I3L2T4_HUMAN
genes like me logo Genes that share paralogs with BAHCC1: view

Variants for BAHCC1 Gene

Sequence variations from dbSNP and Humsavar for BAHCC1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000042484 -- 81,427,815(+) G/A intron_variant
rs1000051684 -- 81,456,216(+) A/C intron_variant
rs1000150156 -- 81,439,474(+) G/A intron_variant
rs1000172139 -- 81,431,877(+) G/T intron_variant
rs1000218577 -- 81,402,468(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for BAHCC1 Gene

Variant ID Type Subtype PubMed ID
dgv1830e59 CNV duplication 20981092
dgv3293n100 CNV gain+loss 25217958
dgv3294n100 CNV loss 25217958
dgv3295n100 CNV gain 25217958
esv1007420 CNV insertion 20482838
esv1130130 CNV insertion 17803354
esv1485304 CNV deletion 17803354
esv1551656 CNV deletion 17803354
esv1750680 CNV deletion 17803354
esv2604305 CNV loss 19546169
esv26223 CNV gain+loss 19812545
esv2716446 CNV deletion 23290073
esv2799 CNV loss 18987735
esv7468 CNV loss 19470904
nsv1056174 CNV gain 25217958
nsv1057744 CNV gain 25217958
nsv1070853 CNV deletion 25765185
nsv1160500 CNV duplication 26073780
nsv1160501 CNV duplication 26073780
nsv165 CNV insertion 15895083
nsv2163 CNV insertion 18451855
nsv428351 CNV gain 18775914
nsv457973 CNV loss 19166990
nsv472924 CNV novel sequence insertion 20440878
nsv576173 CNV loss 21841781
nsv576174 CNV loss 21841781
nsv576175 CNV loss 21841781
nsv576176 CNV loss 21841781
nsv576177 CNV gain 21841781
nsv828128 CNV loss 20364138
nsv828134 CNV loss 20364138
nsv828135 CNV loss 20364138
nsv952389 CNV deletion 24416366
nsv954582 CNV deletion 24416366

Additional Variant Information for BAHCC1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BAHCC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BAHCC1 Gene

Disorders for BAHCC1 Gene

Additional Disease Information for BAHCC1

No disorders were found for BAHCC1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BAHCC1 Gene

Publications for BAHCC1 Gene

  1. Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10819331) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2000) 2 3 4 58
  2. TBCD may be a causal gene in progressive neurodegenerative encephalopathy with atypical infantile spinal muscular atrophy. (PMID: 27928163) Ikeda T … Nunoi H (Journal of human genetics 2017) 3 58
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  4. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  5. Recruitment of the Mammalian Histone-modifying EMSY Complex to Target Genes Is Regulated by ZNF131. (PMID: 26841866) Varier RA … Vermeulen M (The Journal of biological chemistry 2016) 3 58

Products for BAHCC1 Gene

Sources for BAHCC1 Gene

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