Aliases for BACH1-IT3 Gene

Subcategory (RNA class) for BACH1-IT3 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for BACH1-IT3 Gene

  • BACH1 Intronic Transcript 3 2 3 5
  • BACH1 Intronic Transcript 3 (Non-Protein Coding) 2 3
  • BACH1-IT3 2 168
  • Chromosome 21 Open Reading Frame 8 2
  • NONHSAG032628 92
  • HSALNG0132556 167
  • NCRNA00097 3
  • C21orf8 3

External Ids for BACH1-IT3 Gene

Previous HGNC Symbols for BACH1-IT3 Gene

  • C21orf8

Previous GeneCards Identifiers for BACH1-IT3 Gene

  • GC21P030869

Summaries for BACH1-IT3 Gene

GeneCards Summary for BACH1-IT3 Gene

BACH1-IT3 (BACH1 Intronic Transcript 3) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for BACH1-IT3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for BACH1-IT3 Gene

Genomics for BACH1-IT3 Gene

GeneHancer (GH) Regulatory Elements for BACH1-IT3 Gene

Promoters and enhancers for BACH1-IT3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J029499 Enhancer 0.6 ENCODE 0.7 +3.8 3829 0.2 CTCF REST SMC3 RAD21 YY1 ZNF592 RCOR1 SMARCB1 ZNF654 ZBTB33 BACH1-IT3 piR-38351-286 lnc-GRIK1-3 BACH1 GRIK1-AS2
GH21J029501 Enhancer 0.4 Ensembl ENCODE 0.4 +5.4 5422 1.3 CEBPB BACH1-IT3 lnc-GRIK1-3 piR-38351-286 BACH1 GRIK1-AS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BACH1-IT3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BACH1-IT3 Gene

Genomic Locations for BACH1-IT3 Gene
chr21:29,496,047-29,500,387
(GRCh38/hg38)
Size:
4,341 bases
Orientation:
Plus strand
chr21:30,868,367-30,872,706
(GRCh37/hg19)
Size:
4,340 bases
Orientation:
Plus strand

Genomic View for BACH1-IT3 Gene

Genes around BACH1-IT3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BACH1-IT3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BACH1-IT3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BACH1-IT3 Gene

Proteins for BACH1-IT3 Gene

Post-translational modifications for BACH1-IT3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BACH1-IT3 Gene

Domains & Families for BACH1-IT3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for BACH1-IT3 Gene

Function for BACH1-IT3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BACH1-IT3 Gene

Localization for BACH1-IT3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BACH1-IT3 Gene

Pathways & Interactions for BACH1-IT3 Gene

PathCards logo

SuperPathways for BACH1-IT3 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for BACH1-IT3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for BACH1-IT3 Gene

Drugs & Compounds for BACH1-IT3 Gene

No Compound Related Data Available

Transcripts for BACH1-IT3 Gene

mRNA/cDNA for BACH1-IT3 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for BACH1-IT3 Gene

No ASD Table

Relevant External Links for BACH1-IT3 Gene

GeneLoc Exon Structure for
BACH1-IT3

Expression for BACH1-IT3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BACH1-IT3 Gene

genes like me logo Genes that share expression patterns with BACH1-IT3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BACH1-IT3 Gene

Orthologs for BACH1-IT3 Gene

Evolution for BACH1-IT3 Gene

ENSEMBL:
Gene Tree for BACH1-IT3 (if available)
TreeFam:
Gene Tree for BACH1-IT3 (if available)

No data available for Orthologs for BACH1-IT3 Gene

Paralogs for BACH1-IT3 Gene

No data available for Paralogs for BACH1-IT3 Gene

Variants for BACH1-IT3 Gene

Additional dbSNP identifiers (rs#s) for BACH1-IT3 Gene

Additional Variant Information for BACH1-IT3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BACH1-IT3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BACH1-IT3 Gene

Disorders for BACH1-IT3 Gene

Additional Disease Information for BACH1-IT3

No disorders were found for BACH1-IT3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BACH1-IT3 Gene

Publications for BACH1-IT3 Gene

No publications were found for BACH1-IT3 Gene.

Products for BACH1-IT3 Gene

Sources for BACH1-IT3 Gene