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Aliases for BACH1-IT2 Gene

Subcategory (RNA class) for BACH1-IT2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BACH1-IT2 Gene

  • BACH1 Intronic Transcript 2 2 3 5
  • BACH1 Intronic Transcript 2 (Non-Protein Coding) 2

External Ids for BACH1-IT2 Gene

Previous GeneCards Identifiers for BACH1-IT2 Gene

  • GC00U933585
  • GC21P030745

Summaries for BACH1-IT2 Gene

GeneCards Summary for BACH1-IT2 Gene

BACH1-IT2 (BACH1 Intronic Transcript 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BACH1-IT2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BACH1-IT2 Gene

Genomics for BACH1-IT2 Gene

GeneHancer (GH) Regulatory Elements for BACH1-IT2 Gene

Promoters and enhancers for BACH1-IT2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I029021 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.1 -346.3 -346273 4.7 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 USP16 ENSG00000273254 CCT8 BACH1 RWDD2B N6AMT1 LTN1 RPL12P9 RPL23P2 BACH1-IT1
GH21I029161 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.2 -207.1 -207125 3.4 RAD21 ZBTB40 RFX5 ZNF335 EGR1 ZNF366 FOS EGR2 ZNF654 ZNF362 BACH1 ENSG00000224649 MAP3K7CL CCT8 BACH1-IT2 BACH1-AS1 LINC00189 USP16 LOC105372767 ENSG00000201984
GH21I029346 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.4 -20.9 -20936 6.3 SMAD1 FOXA2 NFIB IRF4 THRB RAD21 POLR2B E2F8 ARID2 SCRT2 RPL23P2 LTN1 ENSG00000224649 ENSG00000231125 USP16 BACH1-IT2 BACH1-AS1 RPL12P9 LINC00189 MAP3K7CL
GH21I029372 Enhancer 1 ENCODE dbSUPER 0.8 +2.0 2039 0.2 ZSCAN5A CTCF PKNOX1 ARNT ZSCAN4 PYGO2 ZNF2 RAD21 CHAMP1 CC2D1A GC21P029375 ENSG00000273254 N6AMT1 RPL23P2 USP16 BACH1-AS1 BACH1-IT2 GRIK1-AS2 BACH1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BACH1-IT2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BACH1-IT2 Gene

Genomic Locations for BACH1-IT2 Gene
chr21:29,370,497-29,373,980
(GRCh38/hg38)
Size:
3,484 bases
Orientation:
Plus strand
chr21:30,742,944-30,746,029
(GRCh37/hg19)

Genomic View for BACH1-IT2 Gene

Genes around BACH1-IT2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BACH1-IT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BACH1-IT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BACH1-IT2 Gene

Proteins for BACH1-IT2 Gene

Post-translational modifications for BACH1-IT2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BACH1-IT2 Gene

Domains & Families for BACH1-IT2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BACH1-IT2 Gene

Function for BACH1-IT2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BACH1-IT2 Gene

Localization for BACH1-IT2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BACH1-IT2 Gene

Pathways & Interactions for BACH1-IT2 Gene

SuperPathways for BACH1-IT2 Gene

No Data Available

Interacting Proteins for BACH1-IT2 Gene

Gene Ontology (GO) - Biological Process for BACH1-IT2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BACH1-IT2 Gene

Drugs & Compounds for BACH1-IT2 Gene

No Compound Related Data Available

Transcripts for BACH1-IT2 Gene

mRNA/cDNA for BACH1-IT2 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BACH1-IT2 Gene

No ASD Table

Relevant External Links for BACH1-IT2 Gene

GeneLoc Exon Structure for
BACH1-IT2
ECgene alternative splicing isoforms for
BACH1-IT2

Expression for BACH1-IT2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BACH1-IT2 Gene

mRNA differential expression in normal tissues according to GTEx for BACH1-IT2 Gene

This gene is overexpressed in Whole Blood (x7.3), Muscle - Skeletal (x6.9), and Testis (x5.7).
genes like me logo Genes that share expression patterns with BACH1-IT2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BACH1-IT2 Gene

Orthologs for BACH1-IT2 Gene

Evolution for BACH1-IT2 Gene

ENSEMBL:
Gene Tree for BACH1-IT2 (if available)
TreeFam:
Gene Tree for BACH1-IT2 (if available)

No data available for Orthologs for BACH1-IT2 Gene

Paralogs for BACH1-IT2 Gene

No data available for Paralogs for BACH1-IT2 Gene

Variants for BACH1-IT2 Gene

Sequence variations from dbSNP and Humsavar for BACH1-IT2 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000390550 -- 29,373,835(+) C/T non_coding_transcript_variant
rs1001750695 -- 29,370,531(+) A/C upstream_transcript_variant
rs1003819058 -- 29,371,975(+) A/C/G upstream_transcript_variant
rs1004171424 -- 29,371,675(+) G/T upstream_transcript_variant
rs1005499050 -- 29,373,686(+) G/A non_coding_transcript_variant

Additional Variant Information for BACH1-IT2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BACH1-IT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BACH1-IT2 Gene

Disorders for BACH1-IT2 Gene

Additional Disease Information for BACH1-IT2

No disorders were found for BACH1-IT2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BACH1-IT2 Gene

Publications for BACH1-IT2 Gene

No publications were found for BACH1-IT2 Gene.

Products for BACH1-IT2 Gene

Sources for BACH1-IT2 Gene

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