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BACE1-AS Gene(RNA Gene)

BACE1 Antisense RNA

GCID:
GC11P117290
GIFtS:
11
Genes Participants
UDN Logo

Aliases for BACE1-AS Gene

Subcategory (RNA class) for BACE1-AS Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for BACE1-AS Gene

  • BACE1 Antisense RNA 2 3 5
  • BACE1 Antisense RNA (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 177 2
  • NCRNA00177 3
  • BACE1-AS1 3
  • BACE1AS 3

External Ids for BACE1-AS Gene

Previous HGNC Symbols for BACE1-AS Gene

  • BACE1AS

Previous GeneCards Identifiers for BACE1-AS Gene

  • GC11U901760
  • GC11P117165

Summaries for BACE1-AS Gene

Entrez Gene Summary for BACE1-AS Gene

  • This gene encodes an unspliced long non-coding RNA transcribed from the opposite strand to BACE1. The encoded transcript is thought to form an RNA duplex with BACE1 mRNA thereby regulating its expression and is also thought to promote post-transcriptional feed-forward regulation of BACE1. This may lead to increased levels of beta amyloid and increased senile plaque deposition, and therefore may play a role in the pathophysiology of Alzheimer's disease. [provided by RefSeq, Jan 2015]

GeneCards Summary for BACE1-AS Gene

BACE1-AS (BACE1 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with BACE1-AS include Inclusion Body Myositis and Heart Disease.

Additional gene information for BACE1-AS Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BACE1-AS Gene

Genomics for BACE1-AS Gene

Products:

  1. Regulatory Element

Genomic Locations for BACE1-AS Gene

Genomic Locations for BACE1-AS Gene
chr11:117,290,874-117,293,571
(GRCh38/hg38)
Size:
2,698 bases
Orientation:
Plus strand
chr11:117,162,062-117,162,859
(GRCh37/hg19)
Size:
798 bases
Orientation:
Plus strand

Genomic View for BACE1-AS Gene

Genes around BACE1-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BACE1-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BACE1-AS Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for BACE1-AS Gene

No data available for GeneHancer (GH) Regulatory Elements for BACE1-AS Gene

Proteins for BACE1-AS Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for BACE1-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for BACE1-AS Gene

Domains & Families for BACE1-AS Gene

Gene Families for BACE1-AS Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BACE1-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BACE1-AS Gene

Function for BACE1-AS Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BACE1-AS Gene

Localization for BACE1-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BACE1-AS Gene

Pathways & Interactions for BACE1-AS Gene

SuperPathways for BACE1-AS Gene

PathCards logo More details on SuperPathways for BACE1-AS
No Data Available

Interacting Proteins for BACE1-AS Gene

Gene Ontology (GO) - Biological Process for BACE1-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BACE1-AS Gene

Drugs & Compounds for BACE1-AS Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for BACE1-AS Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for BACE1-AS Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for BACE1-AS Gene

No ASD Table

Relevant External Links for BACE1-AS Gene

GeneLoc Exon Structure for
BACE1-AS
ECgene alternative splicing isoforms for
BACE1-AS

Expression for BACE1-AS Gene

Products:

  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BACE1-AS Gene

Orthologs for BACE1-AS Gene

Evolution for BACE1-AS Gene

ENSEMBL:
Gene Tree for BACE1-AS (if available)
TreeFam:
Gene Tree for BACE1-AS (if available)

No data available for Orthologs for BACE1-AS Gene

Paralogs for BACE1-AS Gene

No data available for Paralogs for BACE1-AS Gene

Variants for BACE1-AS Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for BACE1-AS Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1002361591 -- 117,291,604(+) T/C non_coding_transcript_variant
rs1005415403 -- 117,290,209(+) G/A upstream_transcript_variant
rs1006137895 -- 117,291,533(+) C/T non_coding_transcript_variant
rs1006519739 -- 117,291,224(+) C/ upstream_transcript_variant
rs1007647521 -- 117,292,055(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for BACE1-AS Gene

Variant ID Type Subtype PubMed ID
nsv1038815 CNV gain 25217958
nsv509443 CNV insertion 20534489

Additional Variant Information for BACE1-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BACE1-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BACE1-AS Gene

Disorders for BACE1-AS Gene

MalaCards: The human disease database

(5) MalaCards diseases for BACE1-AS Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
inclusion body myositis
  • ibm
heart disease
  • congestive heart failure
alzheimer disease
  • ad
ovarian cancer
  • ovarian cancer, somatic
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for BACE1-AS

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with BACE1-AS: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BACE1-AS Gene

Publications for BACE1-AS Gene

  1. Knockdown of BACE1-AS Nonprotein-Coding Transcript Modulates Beta-Amyloid-Related Hippocampal Neurogenesis. (PMID: 21785702) Modarresi F … Lopez-Toledano MA (International journal of Alzheimer's disease 2011) 2 3 58
  2. Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase. (PMID: 18587408) Faghihi MA … Wahlestedt C (Nature medicine 2008) 2 3 58
  3. Increased BACE1-AS long noncoding RNA and β-amyloid levels in heart failure. (PMID: 28158647) Greco S … Martelli F (Cardiovascular research 2017) 3 58
  4. Long non-coding RNA BACE1-AS is a novel target for anisomycin-mediated suppression of ovarian cancer stem cell proliferation and invasion. (PMID: 26783004) Chen Q … Liu T (Oncology reports 2016) 3 58
  5. HuD regulates coding and noncoding RNA to induce APP→Aβ processing. (PMID: 24857657) Kang MJ … Gorospe M (Cell reports 2014) 3 58

Products for BACE1-AS Gene

Sources for BACE1-AS Gene

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