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Aliases for BAALC-AS2 Gene

Subcategory (RNA class) for BAALC-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for BAALC-AS2 Gene

  • BAALC Antisense RNA 2 2 3 4 5
  • BAALC Opposite Strand 2 3
  • BAALCOS 3 4
  • C8orf56 3 4
  • Chromosome 8 Open Reading Frame 56 2
  • BAALC Antisense Gene Protein 2 4
  • BAALC Opposite Strand Protein 4

External Ids for BAALC-AS2 Gene

Previous HGNC Symbols for BAALC-AS2 Gene

  • C8orf56
  • BAALCOS

Summaries for BAALC-AS2 Gene

GeneCards Summary for BAALC-AS2 Gene

BAALC-AS2 (BAALC Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BAALC-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BAALC-AS2 Gene

Genomics for BAALC-AS2 Gene

GeneHancer (GH) Regulatory Elements for BAALC-AS2 Gene

Promoters and enhancers for BAALC-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J103140 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 650.7 +0.6 574 0.6 SP3 ZNF398 ZFHX2 ZNF366 POLR2A MTA1 SCRT2 ZNF524 ZBTB26 EZH2 BAALC BAALC-AS2
GH08J103183 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -44.1 -44052 4.6 MEIS2 PKNOX1 JUN MAX FOSL1 POLR2A RCOR1 FOSL2 FOS ZNF189 BAALC-AS2 ENSG00000253851 LINC01181 FZD6 DCAF13 ENSG00000266289 BAALC AZIN1 MIR3151 PIR39342
GH08J103108 Enhancer 1 FANTOM5 ENCODE dbSUPER 11.4 +32.4 32368 1.1 MXI1 NFIC USF1 POLR2A NFIB FOS BAALC-AS2 ATP6V1C1 KLF10 BAALC LINC01181 MTCO2P4
GH08J103207 Enhancer 1 Ensembl ENCODE 11.2 -67.5 -67489 3.2 PKNOX1 MZF1 BMI1 DNMT3B RAD21 SCRT2 FOS CEBPB GATAD2B ZEB2 ENSG00000253851 BAALC BAALC-AS2 LINC01181 FZD6 PIR39342 MIR3151 BAALC-AS1
GH08J103119 Enhancer 0.7 ENCODE dbSUPER 11.4 +21.3 21267 1.5 SIX4 PKNOX1 GATA3 RNF2 LINC01181 BAALC-AS2 BAALC FZD6 MTCO2P4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around BAALC-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BAALC-AS2 Gene

Genomic Locations for BAALC-AS2 Gene
chr8:103,132,963-103,141,475
(GRCh38/hg38)
Size:
8,513 bases
Orientation:
Minus strand
chr8:104,145,191-104,153,703
(GRCh37/hg19)
Size:
8,513 bases
Orientation:
Minus strand

Genomic View for BAALC-AS2 Gene

Genes around BAALC-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BAALC-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BAALC-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BAALC-AS2 Gene

Proteins for BAALC-AS2 Gene

  • Protein details for BAALC-AS2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C853-BAAS2_HUMAN
    Recommended name:
    Putative uncharacterized protein BAALC-AS2
    Protein Accession:
    P0C853

    Protein attributes for BAALC-AS2 Gene

    Size:
    105 amino acids
    Molecular mass:
    11579 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BAALC-AS2 Gene

Post-translational modifications for BAALC-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BAALC-AS2 Gene

Domains & Families for BAALC-AS2 Gene

Protein Domains for BAALC-AS2 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BAALC-AS2: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BAALC-AS2 Gene

Function for BAALC-AS2 Gene

Phenotypes From GWAS Catalog for BAALC-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BAALC-AS2 Gene

Localization for BAALC-AS2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BAALC-AS2 gene
Compartment Confidence
nucleus 2
cytosol 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BAALC-AS2 Gene

Pathways & Interactions for BAALC-AS2 Gene

SuperPathways for BAALC-AS2 Gene

No Data Available

Interacting Proteins for BAALC-AS2 Gene

Selected Interacting proteins: P0C853-BAAS2_HUMAN for BAALC-AS2 Gene via UniProtKB

Gene Ontology (GO) - Biological Process for BAALC-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BAALC-AS2 Gene

Drugs & Compounds for BAALC-AS2 Gene

No Compound Related Data Available

Transcripts for BAALC-AS2 Gene

mRNA/cDNA for BAALC-AS2 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for BAALC-AS2 Gene

No ASD Table

Relevant External Links for BAALC-AS2 Gene

GeneLoc Exon Structure for
BAALC-AS2
ECgene alternative splicing isoforms for
BAALC-AS2

Expression for BAALC-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BAALC-AS2 Gene

genes like me logo Genes that share expression patterns with BAALC-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BAALC-AS2 Gene

Orthologs for BAALC-AS2 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for BAALC-AS2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C8orf56 34
  • 98 (a)
OneToOne
Species where no ortholog for BAALC-AS2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for BAALC-AS2 Gene

ENSEMBL:
Gene Tree for BAALC-AS2 (if available)
TreeFam:
Gene Tree for BAALC-AS2 (if available)

Paralogs for BAALC-AS2 Gene

No data available for Paralogs for BAALC-AS2 Gene

Variants for BAALC-AS2 Gene

Sequence variations from dbSNP and Humsavar for BAALC-AS2 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000733901 -- 103,137,891(-) G/T intron_variant
rs1000790996 -- 103,133,472(-) T/A intron_variant
rs1001073732 -- 103,133,848(-) C/G intron_variant
rs1001391079 -- 103,139,524(-) A/C intron_variant
rs1002056169 -- 103,142,611(-) AATAATAATAA/AATAATAA upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for BAALC-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv831413 CNV gain 17160897

Variation tolerance for BAALC-AS2 Gene

Gene Damage Index Score: 1.25; 24.95% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for BAALC-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BAALC-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BAALC-AS2 Gene

Disorders for BAALC-AS2 Gene

Additional Disease Information for BAALC-AS2

No disorders were found for BAALC-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BAALC-AS2 Gene

Publications for BAALC-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 58
  3. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C … Lander ES (Nature 2006) 4 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58

Products for BAALC-AS2 Gene

Sources for BAALC-AS2 Gene

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