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Aliases for BAALC-AS1 Gene

Subcategory (RNA class) for BAALC-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BAALC-AS1 Gene

  • BAALC Antisense RNA 1 2 3 5

External Ids for BAALC-AS1 Gene

Summaries for BAALC-AS1 Gene

GeneCards Summary for BAALC-AS1 Gene

BAALC-AS1 (BAALC Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BAALC-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BAALC-AS1 Gene

Genomics for BAALC-AS1 Gene

GeneHancer (GH) Regulatory Elements for BAALC-AS1 Gene

Promoters and enhancers for BAALC-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I103297 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 -0.3 -329 2.6 SIN3A ZBTB7B BRCA1 ZNF48 SP3 MXD4 REST ZNF592 MXD3 SP7 FZD6 BAALC-AS1 LOC105369147 UBR5 CTHRC1 ENSG00000266289 DCAF13 GC08P103328
GH08I103371 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.7 -73.6 -73632 2.8 PKNOX1 CLOCK FOXA2 ARID4B SIN3A DMAP1 ZBTB7B ZNF48 ZNF143 FOS CTHRC1 DCAF13 BAALC-AS1 FZD6 LINC01181 SLC25A32 ENSG00000266289 GC08P103328
GH08I103346 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 15 -49.9 -49938 3.7 JUN HLF DACH1 ZIC2 JUND POLR2A SCRT2 GLIS1 FOS FZD6 CTHRC1 BAALC-AS1 RNU6-1011P LINC01181 DCAF13 ENSG00000266289 ATP6V1C1 AZIN1 SLC25A32
GH08I103268 Enhancer 0.7 Ensembl ENCODE dbSUPER 11.6 +29.4 29432 2.1 POLR2A FZD6 BAALC-AS1 CTHRC1 BAALC-AS2 ENSG00000253851 LINC01181 BAALC PIR51808 LOC105369147
GH08I103512 Enhancer 0.7 ENCODE 10.1 -213.5 -213456 0.2 CTCF CEBPG RAD21 RFX5 ZNF143 SMC3 ZNF444 DEK RFX1 ZNF654 DCAF13 SLC25A32 LINC01181 FZD6 BAALC-AS1 LOC105375690 RIMS2 ENSG00000255105
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BAALC-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BAALC-AS1 Gene

Genomic Locations for BAALC-AS1 Gene
chr8:103,156,990-103,298,772
(GRCh38/hg38)
Size:
141,783 bases
Orientation:
Minus strand
chr8:104,169,218-104,311,000
(GRCh37/hg19)

Genomic View for BAALC-AS1 Gene

Genes around BAALC-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BAALC-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BAALC-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BAALC-AS1 Gene

Proteins for BAALC-AS1 Gene

Post-translational modifications for BAALC-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BAALC-AS1 Gene

Domains & Families for BAALC-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BAALC-AS1 Gene

Function for BAALC-AS1 Gene

Phenotypes From GWAS Catalog for BAALC-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BAALC-AS1 Gene

Localization for BAALC-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BAALC-AS1 Gene

Pathways & Interactions for BAALC-AS1 Gene

SuperPathways for BAALC-AS1 Gene

No Data Available

Interacting Proteins for BAALC-AS1 Gene

Gene Ontology (GO) - Biological Process for BAALC-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BAALC-AS1 Gene

Drugs & Compounds for BAALC-AS1 Gene

No Compound Related Data Available

Transcripts for BAALC-AS1 Gene

mRNA/cDNA for BAALC-AS1 Gene

(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BAALC-AS1 Gene

No ASD Table

Relevant External Links for BAALC-AS1 Gene

GeneLoc Exon Structure for
BAALC-AS1
ECgene alternative splicing isoforms for
BAALC-AS1

Expression for BAALC-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BAALC-AS1 Gene

genes like me logo Genes that share expression patterns with BAALC-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BAALC-AS1 Gene

Orthologs for BAALC-AS1 Gene

Evolution for BAALC-AS1 Gene

ENSEMBL:
Gene Tree for BAALC-AS1 (if available)
TreeFam:
Gene Tree for BAALC-AS1 (if available)

No data available for Orthologs for BAALC-AS1 Gene

Paralogs for BAALC-AS1 Gene

No data available for Paralogs for BAALC-AS1 Gene

Variants for BAALC-AS1 Gene

Sequence variations from dbSNP and Humsavar for BAALC-AS1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000065587 -- 103,167,687(-) G/T intron_variant
rs1000460 -- 103,173,517(-) A/T upstream_transcript_variant
rs1000461 -- 103,173,983(-) G/A upstream_transcript_variant
rs1000608737 -- 103,162,839(-) T/C intron_variant
rs1000702135 -- 103,157,218(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for BAALC-AS1 Gene

Variant ID Type Subtype PubMed ID
esv21700 CNV gain 19812545
nsv831413 CNV gain 17160897

Additional Variant Information for BAALC-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BAALC-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BAALC-AS1 Gene

Disorders for BAALC-AS1 Gene

Additional Disease Information for BAALC-AS1

No disorders were found for BAALC-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BAALC-AS1 Gene

Publications for BAALC-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Identification of genes related to Parkinson's disease using expressed sequence tags. (PMID: 17213182) Kim JM … Kim NS (DNA research : an international journal for rapid publication of reports on genes and genomes 2006) 3 58
  3. LncFZD6 initiates Wnt/β-catenin and liver TIC self-renewal through BRG1-mediated FZD6 transcriptional activation. (PMID: 29535420) Chen Z … Weng H (Oncogene 2018) 3

Products for BAALC-AS1 Gene

Sources for BAALC-AS1 Gene

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