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Aliases for B4GALT4-AS1 Gene

Subcategory (RNA class) for B4GALT4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for B4GALT4-AS1 Gene

  • B4GALT4 Antisense RNA 1 2 3 5
  • B4GALT4 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for B4GALT4-AS1 Gene

Previous GeneCards Identifiers for B4GALT4-AS1 Gene

  • GC00U933822
  • GC03P118947

Summaries for B4GALT4-AS1 Gene

GeneCards Summary for B4GALT4-AS1 Gene

B4GALT4-AS1 (B4GALT4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for B4GALT4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for B4GALT4-AS1 Gene

Genomics for B4GALT4-AS1 Gene

GeneHancer (GH) Regulatory Elements for B4GALT4-AS1 Gene

Promoters and enhancers for B4GALT4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I119226 Enhancer 0.3 ENCODE 550.8 +0.9 876 1.6 SP1 B4GALT4-AS1 GC03M119181 IGSF11 B4GALT4
GH03I119194 Enhancer 0.3 ENCODE 11.1 -31.7 -31746 1.4 GATA3 IGSF11 B4GALT4-AS1 B4GALT4 UPK1B GC03M119181
GH03I119236 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 0.4 +12.7 12662 5.2 HDGF ATF1 FOXA2 ARID4B SIN3A ZNF48 YY1 POLR2B GLIS2 ZNF143 B4GALT4 ARHGAP31 GSK3B GC03M119181 B4GALT4-AS1
GH03I119210 Enhancer 0.8 ENCODE 0.4 -15.1 -15110 2.4 HDAC1 MEIS2 PKNOX1 TAL1 SIN3A TCF12 NCOR1 CBFA2T2 FOSL2 SOX6 IGSF11 B4GALT4 UPK1B B4GALT4-AS1 GC03M119181
GH03I119184 Enhancer 0.8 Ensembl ENCODE 0.3 -41.4 -41392 1.6 FOXA2 CHD4 SIX5 SIN3A REST FOXA1 SP1 ATF3 HMBOX1 ZBTB33 B4GALT4 UPK1B ENSG00000251012 GC03M119181 B4GALT4-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around B4GALT4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for B4GALT4-AS1 Gene

Genomic Locations for B4GALT4-AS1 Gene
chr3:119,226,486-119,290,666
(GRCh38/hg38)
Size:
64,181 bases
Orientation:
Plus strand
chr3:118,945,333-119,009,513
(GRCh37/hg19)

Genomic View for B4GALT4-AS1 Gene

Genes around B4GALT4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
B4GALT4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for B4GALT4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for B4GALT4-AS1 Gene

Proteins for B4GALT4-AS1 Gene

Post-translational modifications for B4GALT4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for B4GALT4-AS1 Gene

Domains & Families for B4GALT4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for B4GALT4-AS1 Gene

Function for B4GALT4-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for B4GALT4-AS1 Gene

Localization for B4GALT4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for B4GALT4-AS1 Gene

Pathways & Interactions for B4GALT4-AS1 Gene

SuperPathways for B4GALT4-AS1 Gene

No Data Available

Interacting Proteins for B4GALT4-AS1 Gene

Gene Ontology (GO) - Biological Process for B4GALT4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for B4GALT4-AS1 Gene

Drugs & Compounds for B4GALT4-AS1 Gene

No Compound Related Data Available

Transcripts for B4GALT4-AS1 Gene

mRNA/cDNA for B4GALT4-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for B4GALT4-AS1 Gene

No ASD Table

Relevant External Links for B4GALT4-AS1 Gene

GeneLoc Exon Structure for
B4GALT4-AS1
ECgene alternative splicing isoforms for
B4GALT4-AS1

Expression for B4GALT4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for B4GALT4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for B4GALT4-AS1 Gene

This gene is overexpressed in Testis (x7.3).
genes like me logo Genes that share expression patterns with B4GALT4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for B4GALT4-AS1 Gene

Orthologs for B4GALT4-AS1 Gene

Evolution for B4GALT4-AS1 Gene

ENSEMBL:
Gene Tree for B4GALT4-AS1 (if available)
TreeFam:
Gene Tree for B4GALT4-AS1 (if available)

No data available for Orthologs for B4GALT4-AS1 Gene

Paralogs for B4GALT4-AS1 Gene

No data available for Paralogs for B4GALT4-AS1 Gene

Variants for B4GALT4-AS1 Gene

Sequence variations from dbSNP and Humsavar for B4GALT4-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000268480 -- 119,225,674(+) C/T upstream_transcript_variant
rs1000336401 -- 119,232,093(+) G/T intron_variant
rs1000731267 -- 119,227,752(+) C/T intron_variant
rs1000801202 -- 119,234,516(+) G/C intron_variant
rs1001830202 -- 119,227,622(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for B4GALT4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv25249 CNV loss 19812545
esv3386832 CNV duplication 20981092
esv3597553 CNV loss 21293372
esv3597554 CNV loss 21293372
esv3597555 CNV loss 21293372
nsv591362 CNV loss 21841781

Additional Variant Information for B4GALT4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
B4GALT4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for B4GALT4-AS1 Gene

Disorders for B4GALT4-AS1 Gene

Additional Disease Information for B4GALT4-AS1

No disorders were found for B4GALT4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for B4GALT4-AS1 Gene

Publications for B4GALT4-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for B4GALT4-AS1 Gene

Sources for B4GALT4-AS1 Gene

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