Aliases for B4GALT1 Gene
Aliases for B4GALT1 Gene
- Beta-1,4-Galactosyltransferase 1 2 3 5
- UDP-Galactose:Beta-N-Acetylglucosamine Beta-1,4-Galactosyltransferase 1 3 4
- UDP-Gal:BetaGlcNAc Beta 1,4- Galactosyltransferase, Polypeptide 1 2 3
- UDP-Gal:Beta-GlcNAc Beta-1,4-Galactosyltransferase 1 3 4
- Beta-1,4-GalTase 1 3 4
- Beta4Gal-T1 3 4
- B4GAL-T1 3 4
- GGTB2 3 4
External Ids for B4GALT1 Gene
- HGNC: 924
- Entrez Gene: 2683
- Ensembl: ENSG00000086062
- OMIM: 137060
- UniProtKB: P15291
Previous HGNC Symbols for B4GALT1 Gene
- GGTB2
Previous GeneCards Identifiers for B4GALT1 Gene
- GC09M033422
- GC09M033280
- GC09M033094
Summaries for B4GALT1 Gene
-
This gene is one of seven beta-1,4-galactosyltransferase (beta4GalT) genes. They encode type II membrane-bound glycoproteins that appear to have exclusive specificity for the donor substrate UDP-galactose; all transfer galactose in a beta1,4 linkage to similar acceptor sugars: GlcNAc, Glc, and Xyl. Each beta4GalT has a distinct function in the biosynthesis of different glycoconjugates and saccharide structures. As type II membrane proteins, they have an N-terminal hydrophobic signal sequence that directs the protein to the Golgi apparatus and which then remains uncleaved to function as a transmembrane anchor. By sequence similarity, the beta4GalTs form four groups: beta4GalT1 and beta4GalT2, beta4GalT3 and beta4GalT4, beta4GalT5 and beta4GalT6, and beta4GalT7. This gene is unique among the beta4GalT genes because it encodes an enzyme that participates both in glycoconjugate and lactose biosynthesis. For the first activity, the enzyme adds galactose to N-acetylglucosamine residues that are either monosaccharides or the nonreducing ends of glycoprotein carbohydrate chains. The second activity is restricted to lactating mammary tissues where the enzyme forms a heterodimer with alpha-lactalbumin to catalyze UDP-galactose + D-glucose <=> UDP + lactose. The two enzymatic forms result from alternate transcription initiation sites and post-translational processing. Two transcripts, which differ only at the 5' end, with approximate lengths of 4.1 kb and 3.9 kb encode the same protein. The longer transcript encodes the type II membrane-bound, trans-Golgi resident protein involved in glycoconjugate biosynthesis. The shorter transcript encodes a protein which is cleaved to form the soluble lactose synthase. [provided by RefSeq, Jul 2008]
GeneCards Summary for B4GALT1 Gene
B4GALT1 (Beta-1,4-Galactosyltransferase 1) is a Protein Coding gene. Diseases associated with B4GALT1 include Congenital Disorder Of Glycosylation, Type Iid and Smoldering Myeloma. Among its related pathways are Keratan sulfate/keratin metabolism and Glycosaminoglycan metabolism. Gene Ontology (GO) annotations related to this gene include protein homodimerization activity and cytoskeletal protein binding. An important paralog of this gene is B4GALT2.
UniProtKB/Swiss-Prot for B4GALT1 Gene
-
The Golgi complex form catalyzes the production of lactose in the lactating mammary gland and could also be responsible for the synthesis of complex-type N-linked oligosaccharides in many glycoproteins as well as the carbohydrate moieties of glycolipids.
-
The cell surface form functions as a recognition molecule during a variety of cell to cell and cell to matrix interactions, as those occurring during development and egg fertilization, by binding to specific oligosaccharide ligands on opposing cells or in the extracellular matrix.
Additional gene information for B4GALT1 Gene
- Monarch Initiative
- Search for B4GALT1 at DataMed
- Search for B4GALT1 at HumanCyc
No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for B4GALT1 Gene
Genomics for B4GALT1 Gene
GeneHancer (GH) Regulatory Elements for B4GALT1 Gene
Promoters and enhancers for B4GALT1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around B4GALT1 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the B4GALT1 gene promoter:
Regulatory Element Products
Genomic Locations for B4GALT1 Gene
Genomic Locations for B4GALT1 Gene
- chr9:33,104,082-33,167,358
- (GRCh38/hg38)
- Size:
- 63,277 bases
- Orientation:
- Minus strand
- chr9:33,104,080-33,167,356
- (GRCh37/hg19)
Genomic View for B4GALT1 Gene
Genes around B4GALT1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 9p21.1 by Ensembl
- 9p21.1 by Entrez Gene
- 9p21.1 by HGNC
B4GALT1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for B4GALT1 Gene
Proteins for B4GALT1 Gene
-
Protein details for B4GALT1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P15291-B4GT1_HUMAN
- Recommended name:
- Beta-1,4-galactosyltransferase 1
- Protein Accession:
- P15291
- B2R710
- D3DRL2
- Q12909
- Q12910
- Q12911
- Q14456
- Q14509
- Q14523
Protein attributes for B4GALT1 Gene
- Size:
- 398 amino acids
- Molecular mass:
- 43920 Da
- Cofactor:
- Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
- Quaternary structure:
-
- Homodimer; and heterodimer with alpha-lactalbumin to form lactose synthase. Interacts (via N-terminal cytoplasmic domain) with UBE2Q1 (via N-terminus); the interaction is direct (By similarity).
Three dimensional structures from OCA and Proteopedia for B4GALT1 Gene
Protein Expression for B4GALT1 Gene
Post-translational modifications for B4GALT1 Gene
- The soluble form derives from the membrane forms by proteolytic processing.
- Glycosylation at posLast=113113
Other Protein References for B4GALT1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- R&D Systems Antibodies for B4GALT1 ("beta-1,4-Galactosyltransferase 1/B4GalT1")
-
Custom Antibody ServicesOriGene Antibodies for B4GALT1
- Novus Biologicals Antibodies for B4GALT1
-
Cloud-Clone Corp. Antibodies for B4GALT1
- Invitrogen Antibodies for B4GALT1
- Search GeneTex for Antibodies for B4GALT1
-
Santa Cruz Biotechnology (SCBT) Antibodies for B4GALT1
- Sino Biological Antibodies for B4GALT1
Protein Products
- R&D Systems Proteins and Enzymes for B4GALT1 ("beta-1,4-Galactosyltransferase 1/B4GalT1")
-
OriGene Purified Proteins for B4GALT1
- Search Origene for MassSpec and Protein Over-expression Lysates for B4GALT1
- Origene Custom Protein Services for B4GALT1
- Sino Biological Recombinant Proteins for B4GALT1
- Sino Biological Cell Lysates for B4GALT1
-
Cloud-Clone Corp. Proteins for B4GALT1
- Search GeneTex for Proteins for B4GALT1
No data available for DME Specific Peptides for B4GALT1 Gene
Domains & Families for B4GALT1 Gene
Gene Families for B4GALT1 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Disease related genes
- Enzymes
- Plasma proteins
- Potential drug targets
- Predicted membrane proteins
Protein Domains for B4GALT1 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for B4GALT1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P15291- Family:
-
- Belongs to the glycosyltransferase 7 family.
Function for B4GALT1 Gene
Molecular function for B4GALT1 Gene
- GENATLAS Biochemistry:
- UDP galactose
- UniProtKB/Swiss-Prot CatalyticActivity:
- UDP-alpha-D-galactose + D-glucose = UDP + lactose.
- UniProtKB/Swiss-Prot CatalyticActivity:
- UDP-alpha-D-galactose + N-acetyl-beta-D-glucosaminylglycopeptide = UDP + beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminylglycopeptide.
- UniProtKB/Swiss-Prot CatalyticActivity:
- UDP-alpha-D-galactose + N-acetyl-D-glucosamine = UDP + N-acetyllactosamine.
- UniProtKB/Swiss-Prot Function:
- The Golgi complex form catalyzes the production of lactose in the lactating mammary gland and could also be responsible for the synthesis of complex-type N-linked oligosaccharides in many glycoproteins as well as the carbohydrate moieties of glycolipids.
- UniProtKB/Swiss-Prot Function:
- The cell surface form functions as a recognition molecule during a variety of cell to cell and cell to matrix interactions, as those occurring during development and egg fertilization, by binding to specific oligosaccharide ligands on opposing cells or in the extracellular matrix.
Enzyme Numbers (IUBMB) for B4GALT1 Gene
Phenotypes From GWAS Catalog for B4GALT1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0003831 | beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity | TAS,IEA | -- |
| GO:0003945 | N-acetyllactosamine synthase activity | IEA,IDA | 33805 |
| GO:0004461 | lactose synthase activity | EXP,IDA | 33805 |
| GO:0008092 | cytoskeletal protein binding | IEA | -- |
| GO:0008378 | galactosyltransferase activity | IEA,NAS | 7540104 |
Phenotypes for B4GALT1 Gene
- MGI mutant phenotypes for B4GALT1:
-
inferred from 3 alleles
- nervous system phenotype
- homeostasis/metabolism phenotype
- respiratory system phenotype
- cardiovascular system phenotype
- mortality/aging
- immune system phenotype
- cellular phenotype
- growth/size/body region phenotype
- digestive/alimentary phenotype
- endocrine/exocrine gland phenotype
- reproductive system phenotype
- integument phenotype
- hematopoietic system phenotype
- adipose tissue phenotype
- GenomeRNAi human phenotypes for B4GALT1:
-
- Increased vaccinia virus (VACV) infection
- Decreased viability
- shRNA abundance <= 50%
- Decreased viability in esophageal squamous lineage
- Decreased NF-kappaB reporter expression
- Increased G1 DNA content
- G0/1 arrest
- Decreased infection with West Nile virus (WNV)
- Decreased West Nile virus (WNV) infection
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for B4GALT1
-
-
ViGene Biosciences lentiviral particle packaged cDNA for B4GALT1 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for B4GALT1 gene
- Search ViGene Biosciences for B4GALT1
CRISPR Products
-
OriGene CRISPR knockouts for B4GALT1
- genomics-online: gRNA clones - Search results for 90 available B4GALT1 gene related products
- Overview of 90 available B4GALT1 gene related products
- Applied Biological Materials CRISPR for B4GALT1
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for B4GALT1
- GenScript: Design CRISPR guide RNA sequences for B4GALT1
miRNA for B4GALT1 Gene
- miRTarBase miRNAs that target B4GALT1
-
- hsa-mir-124-3p (MIRT002675)
- hsa-mir-155-5p (MIRT020817)
- hsa-mir-128-3p (MIRT021980)
- hsa-mir-122-5p (MIRT023282)
- hsa-mir-1-3p (MIRT023802)
- hsa-mir-16-5p (MIRT031774)
- hsa-mir-484 (MIRT042255)
- hsa-mir-15b-5p (MIRT046468)
- hsa-mir-18a-5p (MIRT050738)
- hsa-mir-185-5p (MIRT174676)
- hsa-mir-4306 (MIRT174681)
- hsa-mir-1207-5p (MIRT382106)
- hsa-mir-4763-3p (MIRT382110)
- hsa-mir-550a-5p (MIRT409442)
- hsa-mir-550a-3-5p (MIRT409443)
- hsa-mir-1271-3p (MIRT409444)
- hsa-mir-550b-2-5p (MIRT409445)
- hsa-mir-6889-3p (MIRT409446)
- hsa-mir-125a-5p (MIRT437583)
- hsa-mir-4668-5p (MIRT481066)
- hsa-mir-766-5p (MIRT481067)
- hsa-mir-4533 (MIRT481068)
- hsa-mir-6722-3p (MIRT481069)
- hsa-mir-1909-3p (MIRT481070)
- hsa-mir-4490 (MIRT481071)
- hsa-mir-940 (MIRT481072)
- hsa-mir-6893-5p (MIRT481073)
- hsa-mir-6808-5p (MIRT481074)
- hsa-mir-6876-5p (MIRT481075)
- hsa-mir-4476 (MIRT481076)
- hsa-mir-6859-5p (MIRT481077)
- hsa-mir-3916 (MIRT481078)
- hsa-mir-3125 (MIRT481079)
- hsa-mir-6891-5p (MIRT481080)
- hsa-mir-3173-3p (MIRT481081)
- hsa-mir-4511 (MIRT481082)
- hsa-mir-582-3p (MIRT481083)
- hsa-mir-7-2-3p (MIRT481084)
- hsa-mir-7-1-3p (MIRT481085)
- hsa-mir-5688 (MIRT481086)
- hsa-mir-495-3p (MIRT481087)
- hsa-mir-583 (MIRT481088)
- hsa-mir-6773-5p (MIRT705279)
- hsa-mir-6724-5p (MIRT705280)
- hsa-mir-4792 (MIRT705281)
- hsa-mir-296-5p (MIRT705282)
- hsa-mir-4687-3p (MIRT705283)
- hsa-mir-7974 (MIRT705284)
- hsa-mir-4312 (MIRT705285)
- hsa-mir-4641 (MIRT705286)
- hsa-mir-1233-3p (MIRT705287)
- hsa-mir-1225-3p (MIRT705288)
- hsa-mir-6774-5p (MIRT705289)
- hsa-mir-635 (MIRT705290)
- hsa-mir-6504-5p (MIRT705291)
- hsa-mir-3064-5p (MIRT705292)
- hsa-mir-3189-3p (MIRT705293)
- hsa-mir-4726-3p (MIRT705294)
- hsa-mir-125a-3p (MIRT705295)
- hsa-mir-4712-3p (MIRT705296)
- hsa-mir-598-3p (MIRT705297)
- hsa-mir-30d-5p (MIRT728229)
- hsa-mir-30e-5p (MIRT728230)
- hsa-mir-30c-5p (MIRT728231)
- hsa-mir-30b-5p (MIRT728232)
- hsa-mir-30a-5p (MIRT728233)
- hsa-mir-19b-3p (MIRT728234)
- hsa-mir-19a-3p (MIRT728235)
- hsa-mir-195-5p (MIRT728236)
- hsa-mir-15a-5p (MIRT728237)
miRNA Products
- Search ViGene Biosciences for B4GALT1
Inhibitory RNA Products
- Origene RNAi, sirna, and shrna products in human, mouse, rat for B4GALT1
- Browse OriGene Inhibitory RNA Products For B4GALT1
- genomics-online: shRNA clones - Search results for 90 available B4GALT1 gene related products
- Overview of 90 available B4GALT1 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for B4GALT1 gene
Clone Products
- Sino Biological Human cDNA Clone for B4GALT1
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for B4GALT1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for B4GALT1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for B4GALT1
- Applied Biological Materials Clones for B4GALT1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
Horizon Cell Lines for B4GALT1
-
ViGene Biosciences adenoviral particle packaged cDNA for B4GALT1 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for B4GALT1 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for B4GALT1 gene
No data available for Transcription Factor Targets and HOMER Transcription for B4GALT1 Gene
Localization for B4GALT1 Gene
Subcellular locations from UniProtKB/Swiss-Prot for B4GALT1 Gene
- Isoform Long: Golgi apparatus, Golgi stack membrane; Single-pass type II membrane protein. Cell membrane; Single-pass type II membrane protein. Cell surface. Cell projection, filopodium. Note=Found in trans cisternae of Golgi but is mainly localized at the plasma membrane (PubMed:1714903). B4GALT1 cell surface expression is regulated by UBE2Q1 (By similarity). {ECO:0000250 UniProtKB:P15535, ECO:0000269 PubMed:1714903}.
- Isoform Short: Golgi apparatus, Golgi stack membrane; Single-pass type II membrane protein. Note=Found in trans cisternae of Golgi. {ECO:0000269 PubMed:1714903}.
- Processed beta-1,4-galactosyltransferase 1: Secreted. Note=Soluble form found in body fluids. {ECO:0000303 PubMed:2120039}.
| Compartment | Confidence |
|---|---|
| plasma membrane | 5 |
| extracellular | 5 |
| golgi apparatus | 5 |
| lysosome | 4 |
| mitochondrion | 2 |
| endoplasmic reticulum | 1 |
| cytosol | 1 |
- Golgi apparatus (4)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000138 | Golgi trans cisterna | IDA | 6121819 |
| GO:0000139 | Golgi membrane | TAS | -- |
| GO:0005576 | extracellular region | IEA | -- |
| GO:0005615 | extracellular space | IEA,HDA | 16502470 |
| GO:0005794 | Golgi apparatus | IDA | 7744867 |
Pathways & Interactions for B4GALT1 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Keratan sulfate/keratin metabolism | ||
| 2 | Reproduction |
1.00
1.00
|
|
| 3 | Innate Immune System |
.61
|
|
| 4 | Galactose metabolism | ||
| 5 | Metabolism |
.37
|
|
Pathways by source for B4GALT1 Gene
22 Reactome pathways for B4GALT1 Gene
1 GeneGo (Thomson Reuters) pathway for B4GALT1 Gene
1 Qiagen pathway for B4GALT1 Gene
UniProtKB/Swiss-Prot P15291-B4GT1_HUMAN
- Pathway: Protein modification; protein glycosylation.
Interacting Proteins for B4GALT1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0002064 | epithelial cell development | IEA | -- |
| GO:0002526 | acute inflammatory response | IEA | -- |
| GO:0005975 | carbohydrate metabolic process | IEA | -- |
| GO:0005989 | lactose biosynthetic process | TAS,IEA | -- |
| GO:0006012 | galactose metabolic process | IEA | -- |
No data available for SIGNOR curated interactions for B4GALT1 Gene
Drugs & Compounds for B4GALT1 Gene
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs | |
|---|---|---|---|---|---|---|
| beta-Lactose |
|
5965-66-2 |
|
|||
| n-acetyllactosamine |
|
32181-59-2 |
|
Transcripts for B4GALT1 Gene
mRNA/cDNA for B4GALT1 Gene
- (2) REFSEQ mRNAs :
- (18) Additional mRNA sequences :
- (608) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for B4GALT1 Gene
CRISPR Products
-
OriGene CRISPR knockouts for B4GALT1
- genomics-online: gRNA clones - Search results for 90 available B4GALT1 gene related products
- Overview of 90 available B4GALT1 gene related products
- Applied Biological Materials CRISPR for B4GALT1
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for B4GALT1
- GenScript: Design CRISPR guide RNA sequences for B4GALT1
miRNA Products
- Search ViGene Biosciences for B4GALT1
Inhibitory RNA Products
- Origene RNAi, sirna, and shrna products in human, mouse, rat for B4GALT1
- Browse OriGene Inhibitory RNA Products For B4GALT1
- genomics-online: shRNA clones - Search results for 90 available B4GALT1 gene related products
- Overview of 90 available B4GALT1 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for B4GALT1 gene
Clone Products
- Sino Biological Human cDNA Clone for B4GALT1
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for B4GALT1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for B4GALT1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for B4GALT1
- Applied Biological Materials Clones for B4GALT1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for B4GALT1 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Testis (Reproductive System)
- Leydig Cells Testis Interstitium
-
Liver (Hepatobiliary System)
- Hepatocytes Liver Lobule
- Thyroid (Endocrine System)
- Intestine (Gastrointestinal Tract)
- Ovary (Reproductive System)
- Blood (Hematopoietic System)
-
Gall Bladder (Hepatobiliary System)
This gene is overexpressed in Milk (34.4) and Urine (16.7).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for B4GALT1 Gene
NURSA nuclear receptor signaling pathways regulating expression of B4GALT1 Gene:
B4GALT1SOURCE GeneReport for Unigene cluster for B4GALT1 Gene:
Hs.272011mRNA Expression by UniProt/SwissProt for B4GALT1 Gene:
P15291-B4GT1_HUMAN
Tissue specificity:
Ubiquitously expressed, but at very low levels in fetal and adult brain.
Evidence on tissue expression from TISSUES for B4GALT1 Gene
- Liver(4.5)
- Lung(3)
Phenotype-based relationships between genes and organs from Gene ORGANizer for B4GALT1 Gene
Germ Layers:
- ectoderm
- mesoderm
Systems:
- cardiovascular
- nervous
- skeletal muscle
- skeleton
Regions:
Head and neck:
- brain
- cerebellum
- cerebrospinal fluid
- head
- meninges
- skull
General:
- blood
- coagulation system
Primer Products
-
OriGene qPCR primer pairs for B4GALT1
-
OriGene qPCR primer pairs and template standards for B4GALT1
No data available for mRNA differential expression in normal tissues and Protein tissue co-expression partners for B4GALT1 Gene
Orthologs for B4GALT1 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | B4GALT1 33 34 |
|
||
| dog (Canis familiaris) |
Mammalia | B4GALT1 33 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | B4galt1 33 |
|
||
| cow (Bos Taurus) |
Mammalia | B4GALT1 33 34 |
|
||
| mouse (Mus musculus) |
Mammalia | B4galt1 33 16 34 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | B4GALT1 34 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | B4GALT1 34 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | B4GALT1 33 |
|
||
| CKI 34 |
|
OneToOne | |||
| lizard (Anolis carolinensis) |
Reptilia | B4GALT1 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | b4galt1.1 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | zgc:154116 33 |
|
||
| B4GALT1 (2 of 2) 34 |
|
OneToMany | |||
| b4galt1 34 |
|
OneToMany | |||
| fruit fly (Drosophila melanogaster) |
Insecta | BcDNA:GH13356 35 |
|
|
|
| CG14517 35 |
|
|
|||
| beta4GalNAcTA 34 |
|
ManyToMany | |||
| beta4GalNAcTB 34 |
|
ManyToMany | |||
| worm (Caenorhabditis elegans) |
Secernentea | Y73E7A.7 35 |
|
|
|
| W02B12.11 35 |
|
|
|||
| bre-4 34 |
|
OneToMany | |||
| sea squirt (Ciona savignyi) |
Ascidiacea | -- 34 |
|
ManyToMany | |
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany |
- Species where no ortholog for B4GALT1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for B4GALT1 Gene
Variants for B4GALT1 Gene
| SNP ID | Clin | Chr 09 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs10412 | likely-benign, Congenital disorder of glycosylation | 33,110,841(-) | C/T | 3_prime_UTR_variant | |
| rs1055678121 | uncertain-significance, Congenital disorder of glycosylation | 33,167,281(-) | G/A/T | 5_prime_UTR_variant | |
| rs1065765 | benign, likely-benign, not specified, Congenital disorder of glycosylation | 33,135,240(-) | G/A | coding_sequence_variant, synonymous_variant | |
| rs10971412 | uncertain-significance, Congenital disorder of glycosylation | 33,113,068(-) | G/A | 3_prime_UTR_variant | |
| rs113144091 | likely-benign, Congenital disorder of glycosylation | 33,111,779(-) | A/AA | 3_prime_UTR_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| nsv6523 | CNV | deletion | 18451855 |
| nsv614143 | CNV | gain | 21841781 |
| nsv527001 | CNV | loss | 19592680 |
| nsv519369 | CNV | gain | 19592680 |
| nsv509299 | CNV | insertion | 20534489 |
| nsv1142551 | CNV | tandem duplication | 24896259 |
| nsv1132979 | CNV | insertion | 24896259 |
| esv3573223 | CNV | loss | 25503493 |
| esv3362596 | CNV | duplication | 20981092 |
| esv3351325 | CNV | insertion | 20981092 |
| esv3342329 | CNV | insertion | 20981092 |
| esv3324161 | CNV | duplication | 20981092 |
| esv3321590 | CNV | insertion | 20981092 |
| esv3308660 | CNV | mobile element insertion | 20981092 |
| esv3303944 | CNV | mobile element insertion | 20981092 |
| esv2762813 | CNV | gain | 21179565 |
| esv1668110 | CNV | insertion | 17803354 |
| dgv7516n100 | CNV | gain | 25217958 |
| dgv7515n100 | CNV | gain | 25217958 |
| dgv4305e59 | CNV | tandem duplication | 20981092 |
Residual Variation Intolerance Score:
39.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
1.39;
27.46% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for B4GALT1 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for B4GALT1 Gene
Disorders for B4GALT1 Gene
(2) MalaCards diseases for B4GALT1 Gene - From: HGMD, OMIM, ClinVar, GTR, Orphanet, DISEASES, and GeneCards
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| congenital disorder of glycosylation, type iid |
|
|
| smoldering myeloma |
|
|
Search B4GALT1 in MalaCards
View complete list of genes associated with diseases
UniProtKB/Swiss-Prot
B4GT1_HUMAN- Congenital disorder of glycosylation 2D (CDG2D) [MIM:607091]: A multisystem disorder caused by a defect in glycoprotein biosynthesis and characterized by under-glycosylated serum glycoproteins. Congenital disorders of glycosylation result in a wide variety of clinical features, such as defects in the nervous system development, psychomotor retardation, dysmorphic features, hypotonia, coagulation disorders, and immunodeficiency. The broad spectrum of features reflects the critical role of N-glycoproteins during embryonic development, differentiation, and maintenance of cell functions. {ECO:0000269 PubMed:11901181}. Note=The disease is caused by mutations affecting the gene represented in this entry.
Additional Disease Information for B4GALT1
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for Genatlas for B4GALT1 Gene
Publications for B4GALT1 Gene
- Oligosaccharide preferences of beta1,4-galactosyltransferase-I: crystal structures of Met340His mutant of human beta1,4-galactosyltransferase-I with a pentasaccharide and trisaccharides of the N-glycan moiety. (PMID: 16157350) Ramasamy V … Qasba PK (Journal of molecular biology 2005) 3 4 22 25 58
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58
- Deoxygenated disaccharide analogs as specific inhibitors of beta1-4-galactosyltransferase 1 and selectin-mediated tumor metastasis. (PMID: 19106107) Brown JR … Esko JD (The Journal of biological chemistry 2009) 3 4 58
- Association of beta-1,3-N-acetylglucosaminyltransferase 1 and beta-1,4-galactosyltransferase 1, trans-Golgi enzymes involved in coupled poly-N-acetyllactosamine synthesis. (PMID: 19261593) Lee PL … Pfeffer SR (Glycobiology 2009) 3 22 58
- Transcriptomic and genetic studies identify IL-33 as a candidate gene for Alzheimer's disease. (PMID: 19204726) Chapuis J … Lambert JC (Molecular psychiatry 2009) 3 44 58
Products for B4GALT1 Gene
- R&D Systems Antibodies for B4GALT1 ("beta-1,4-Galactosyltransferase 1/B4GalT1")
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- Cloud-Clone Corp. Antibodies for B4GALT1
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- Invitrogen Antibodies for B4GALT1
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Cyagen custom Knockout/knockin (KOKI) mouse models for B4GALT1
- VectorBuilder custom plasmid, inducible vectors for B4GALT1
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- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
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- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for B4GALT1
- antibodies-online: Search results for 36 available B4GALT1 Antibodies ranked by validation data
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- Search GeneTex for Antibodies for B4GALT1
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- ViGene Biosciences adenoviral particle packaged cDNA for B4GALT1 gene
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- ViGene Biosciences ready-to-package AAV shRNAs for B4GALT1 gene
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- Santa Cruz Biotechnology (SCBT) Antibodies for B4GALT1
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- genomics-online: cdna clones - Search results for 90 available B4GALT1 gene related products
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Sources for B4GALT1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew