Aliases for B4GALNT2P1 Gene

Aliases for B4GALNT2P1 Gene

  • B4GALNT2 Pseudogene 1 2 3 5
  • Beta-1,4-N-Acetyl-Galactosaminyltransferase 2 Pseudogene 1 2 3
  • Beta-1,4-N-Acetyl-Galactosaminyl Transferase 2 Pseudogene 1 3

External Ids for B4GALNT2P1 Gene

Summaries for B4GALNT2P1 Gene

GeneCards Summary for B4GALNT2P1 Gene

B4GALNT2P1 (B4GALNT2 Pseudogene 1) is a Pseudogene.

Additional gene information for B4GALNT2P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for B4GALNT2P1 Gene

Genomics for B4GALNT2P1 Gene

GeneHancer (GH) Regulatory Elements for B4GALNT2P1 Gene

Promoters and enhancers for B4GALNT2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J049082 Enhancer 0.4 Ensembl 500.7 +1.4 1390 1 KDM1A ARID3A ZNF384 B4GALNT2P1 lnc-IGF2BP1-1 ENSG00000238804 PRAC1 PRAC2 ABI3 GNGT2 ENSG00000250186 ENSG00000186244 PHB
GH17J049076 Enhancer 1 Ensembl ENCODE 0.4 -8.6 -8596 1.8 TCF12 GTF2E2 FOS ZBTB11 RFX1 CTBP1 HINFP ZNF592 GABPA REST SPOP HOXB13 B4GALNT2P1 lnc-IGF2BP1-1 lnc-B4GALNT2-2
GH17J049068 Enhancer 1.1 Ensembl ENCODE 0.4 -16.4 -16442 1.9 EP300 FOXK2 POLR2G NCOR1 KDM6A TCF7 ZBTB25 TGIF2 SMARCC2 SKI ATP5MC1 SNF8 lnc-B4GALNT2-2 B4GALNT2P1 lnc-IGF2BP1-1
GH17J049106 Enhancer 1.1 Ensembl ENCODE 0.4 +22.0 21990 4.2 EP300 FOXK2 ZNF217 TCF12 NCOR1 FOS KDM6A TCF7 FOXA1 HES1 B4GALNT2 ENSG00000238804 ABI3 GNGT2 HSALNG0117153 B4GALNT2P1 lnc-IGF2BP1-1
GH17J049100 Enhancer 1 Ensembl ENCODE 0.4 +16.0 16033 2.3 ZNF217 TCF12 JUND FOS CLOCK REST RFX1 HES1 CUX1 CHD1 B4GALNT2 B4GALNT2P1 lnc-IGF2BP1-1 HSALNG0117153
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around B4GALNT2P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for B4GALNT2P1 Gene

Genomic Locations for B4GALNT2P1 Gene
chr17:49,085,511-49,086,702
(GRCh38/hg38)
Size:
1,192 bases
Orientation:
Plus strand
chr17:47,162,873-47,164,064
(GRCh37/hg19)
Size:
1,192 bases
Orientation:
Plus strand

Genomic View for B4GALNT2P1 Gene

Genes around B4GALNT2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
B4GALNT2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for B4GALNT2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for B4GALNT2P1 Gene

Proteins for B4GALNT2P1 Gene

Post-translational modifications for B4GALNT2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for B4GALNT2P1 Gene

Domains & Families for B4GALNT2P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for B4GALNT2P1 Gene

Function for B4GALNT2P1 Gene

Phenotypes From GWAS Catalog for B4GALNT2P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for B4GALNT2P1 Gene

Localization for B4GALNT2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for B4GALNT2P1 Gene

Pathways & Interactions for B4GALNT2P1 Gene

PathCards logo

SuperPathways for B4GALNT2P1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for B4GALNT2P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for B4GALNT2P1 Gene

Drugs & Compounds for B4GALNT2P1 Gene

No Compound Related Data Available

Transcripts for B4GALNT2P1 Gene

mRNA/cDNA for B4GALNT2P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for B4GALNT2P1 Gene

No ASD Table

Relevant External Links for B4GALNT2P1 Gene

GeneLoc Exon Structure for
B4GALNT2P1

Expression for B4GALNT2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for B4GALNT2P1 Gene

genes like me logo Genes that share expression patterns with B4GALNT2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for B4GALNT2P1 Gene

Orthologs for B4GALNT2P1 Gene

Evolution for B4GALNT2P1 Gene

ENSEMBL:
Gene Tree for B4GALNT2P1 (if available)
TreeFam:
Gene Tree for B4GALNT2P1 (if available)

No data available for Orthologs for B4GALNT2P1 Gene

Paralogs for B4GALNT2P1 Gene

No data available for Paralogs for B4GALNT2P1 Gene

Variants for B4GALNT2P1 Gene

Additional Variant Information for B4GALNT2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
B4GALNT2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for B4GALNT2P1 Gene

Disorders for B4GALNT2P1 Gene

No disorders were found for B4GALNT2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for B4GALNT2P1 Gene

Publications for B4GALNT2P1 Gene

No publications were found for B4GALNT2P1 Gene.

No data available for Mastermind for B4GALNT2P1 Gene

Products for B4GALNT2P1 Gene

Sources for B4GALNT2P1 Gene