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Aliases for B3GNT2 Gene

Aliases for B3GNT2 Gene

  • UDP-GlcNAc:BetaGal Beta-1,3-N-Acetylglucosaminyltransferase 2 2 3 4 5
  • UDP-GlcNAc:BetaGal Beta-1,3-N-Acetylglucosaminyltransferase 1 2 3
  • Beta3Gn-T1 3 4
  • Beta3Gn-T2 3 4
  • B3GNT1 3 4
  • BGnT-2 3 4
  • UDP-Galactose:Beta-N-Acetylglucosamine Beta-1,3-Galactosyltransferase 7 4
  • N-Acetyllactosaminide Beta-1,3-N-Acetylglucosaminyltransferase 2 3
  • UDP-Gal:Beta-GlcNAc Beta-1,3-Galactosyltransferase 7 4
  • Beta-1,3-N-Acetylglucosaminyltransferase BGnT-1 3
  • Beta-1,3-N-Acetylglucosaminyltransferase BGnT-2 3
  • Beta-1,3-N-Acetylglucosaminyltransferase 1 4
  • Beta-1,3-N-Acetylglucosaminyltransferase 2 4
  • Beta-1,3-Galactosyltransferase 7 4
  • Beta-1,3-GalTase 7 4
  • Beta-1,3-Gn-T1 4
  • Beta-1,3-Gn-T2 4
  • Beta-3-Gx-T7 4
  • EC 2.4.1.149 4
  • Beta3Gal-T7 4
  • Beta3GalT7 4
  • BETA3GNT 3
  • B3Gal-T7 4
  • 3-Gn-T1 3
  • 3-Gn-T2 3
  • B3GN-T2 3
  • B3GNT-2 3
  • B3GALT7 4
  • Beta-1 3
  • BGnT-1 4
  • B3GNT 3
  • BGNT2 3

External Ids for B3GNT2 Gene

Previous HGNC Symbols for B3GNT2 Gene

  • B3GNT1

Previous GeneCards Identifiers for B3GNT2 Gene

  • GC02P062276
  • GC02P062423

Summaries for B3GNT2 Gene

Entrez Gene Summary for B3GNT2 Gene

  • This gene encodes a member of the beta-1,3-N-acetylglucosaminyltransferase family. This enzyme is a type II transmembrane protein. It prefers the substrate of lacto-N-neotetraose, and is involved in the biosynthesis of poly-N-acetyllactosamine chains. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jan 2016]

GeneCards Summary for B3GNT2 Gene

B3GNT2 (UDP-GlcNAc:BetaGal Beta-1,3-N-Acetylglucosaminyltransferase 2) is a Protein Coding gene. Diseases associated with B3GNT2 include Kidney Fibrosarcoma and Walker-Warburg Syndrome. Among its related pathways are O-linked glycosylation and Metabolism. Gene Ontology (GO) annotations related to this gene include galactosyltransferase activity and N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity. An important paralog of this gene is B3GNT9.

UniProtKB/Swiss-Prot for B3GNT2 Gene

  • Beta-1,3-N-acetylglucosaminyltransferase involved in the synthesis of poly-N-acetyllactosamine. Catalyzes the initiation and elongation of poly-N-acetyllactosamine chains. Shows a marked preference for Gal(beta1-4)Glc(NAc)-based acceptors (PubMed:9892646). Probably constitutes the main polylactosamine synthase.

Gene Wiki entry for B3GNT2 Gene

Additional gene information for B3GNT2 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for B3GNT2 Gene

Genomics for B3GNT2 Gene

GeneHancer (GH) Regulatory Elements for B3GNT2 Gene

Promoters and enhancers for B3GNT2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J062194 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 654.7 +1.6 1574 7.1 HDGF FOXA2 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 B3GNT2 XPO1 USP34 LOC105377633 MIR5192 GC02P062192 GC02M062151
GH02J062214 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 662.7 +22.1 22140 6.7 HDAC1 DNMT3B GATA2 EGR1 ZFP91 RCOR1 FOS CEBPB ZNF592 NR2F2 B3GNT2 MIR5192 RN7SL51P GC02M062151
GH02J062000 Promoter 0.7 EPDnew 650.1 -195.3 -195259 0.1 CTCF SCRT2 GC02P062000 B3GNT2 GC02P062003 COMMD1
GH02J062135 Promoter 0.5 EPDnew 661.4 -60.2 -60174 0.1 B3GNT2 RPSAP26 ENSG00000229839 GC02P062003 COMMD1
GH02J062302 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 29.6 +110.4 110375 8 HDGF PKNOX1 SMAD1 ARNT ARID4B NEUROD1 IRF4 ZNF766 FOS JUNB B3GNT2 GC02M062151 LOC105374761
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around B3GNT2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the B3GNT2 gene promoter:
  • STAT5A
  • Pax-5
  • AML1a
  • Nkx2-5
  • Pbx1a
  • ATF-2
  • CREB
  • Nkx5-1
  • En-1
  • Brachyury

Genomic Locations for B3GNT2 Gene

Genomic Locations for B3GNT2 Gene
chr2:62,196,113-62,224,731
(GRCh38/hg38)
Size:
28,619 bases
Orientation:
Plus strand
chr2:62,423,248-62,451,866
(GRCh37/hg19)
Size:
28,619 bases
Orientation:
Plus strand

Genomic View for B3GNT2 Gene

Genes around B3GNT2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
B3GNT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for B3GNT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for B3GNT2 Gene

Proteins for B3GNT2 Gene

  • Protein details for B3GNT2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NY97-B3GN2_HUMAN
    Recommended name:
    N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2
    Protein Accession:
    Q9NY97
    Secondary Accessions:
    • Q54AC1
    • Q9NQQ9
    • Q9NQR0
    • Q9NUT9

    Protein attributes for B3GNT2 Gene

    Size:
    397 amino acids
    Molecular mass:
    46022 Da
    Cofactor:
    Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
    Quaternary structure:
    • Interacts with B3GNT8; this interaction greatly increases B3GNT2 catalytic activity, independently of B3GNT8 enzymatic activity.
    SequenceCaution:
    • Sequence=BAA92031.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for B3GNT2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for B3GNT2 Gene

Post-translational modifications for B3GNT2 Gene

  • Glycosylation at Asn219, posLast=173173, posLast=127127, Asn89, and posLast=7979
  • Ubiquitination at Lys50
  • Modification sites at PhosphoSitePlus

Other Protein References for B3GNT2 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • R&D Systems Antibodies for B3GNT2 ("Beta-1,3-N-Acetylglucosaminyltransferase 2/B3GNT2")
  • Abcam antibodies for B3GNT2
  • Boster Bio Antibodies for B3GNT2

Protein Products

  • Abcam proteins for B3GNT2

No data available for DME Specific Peptides for B3GNT2 Gene

Domains & Families for B3GNT2 Gene

Gene Families for B3GNT2 Gene

HGNC:
Human Protein Atlas (HPA):
  • Enzymes
  • Plasma proteins
  • Predicted membrane proteins

Protein Domains for B3GNT2 Gene

Suggested Antigen Peptide Sequences for B3GNT2 Gene

Graphical View of Domain Structure for InterPro Entry

Q9NY97

UniProtKB/Swiss-Prot:

B3GN2_HUMAN :
  • Belongs to the glycosyltransferase 31 family.
Family:
  • Belongs to the glycosyltransferase 31 family.
genes like me logo Genes that share domains with B3GNT2: view

Function for B3GNT2 Gene

Molecular function for B3GNT2 Gene

UniProtKB/Swiss-Prot Function:
Beta-1,3-N-acetylglucosaminyltransferase involved in the synthesis of poly-N-acetyllactosamine. Catalyzes the initiation and elongation of poly-N-acetyllactosamine chains. Shows a marked preference for Gal(beta1-4)Glc(NAc)-based acceptors (PubMed:9892646). Probably constitutes the main polylactosamine synthase.
UniProtKB/Swiss-Prot CatalyticActivity:
UDP-N-acetyl-alpha-D-glucosamine + beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-R = UDP + N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-R.

Enzyme Numbers (IUBMB) for B3GNT2 Gene

Phenotypes From GWAS Catalog for B3GNT2 Gene

Gene Ontology (GO) - Molecular Function for B3GNT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008375 acetylglucosaminyltransferase activity IBA --
GO:0008376 acetylgalactosaminyltransferase activity IBA --
GO:0008378 galactosyltransferase activity IEA --
GO:0008499 UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity TAS --
GO:0008532 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity TAS,IEA --
genes like me logo Genes that share ontologies with B3GNT2: view
genes like me logo Genes that share phenotypes with B3GNT2: view

Animal Models for B3GNT2 Gene

MGI Knock Outs for B3GNT2:

Animal Model Products

  • Taconic Biosciences Mouse Models for B3GNT2

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for B3GNT2

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for B3GNT2 Gene

Localization for B3GNT2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for B3GNT2 Gene

Golgi apparatus membrane; Single-pass type II membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for B3GNT2 gene
Compartment Confidence
extracellular 5
golgi apparatus 5
peroxisome 1
endoplasmic reticulum 1
lysosome 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for B3GNT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane TAS --
GO:0005783 endoplasmic reticulum IBA --
GO:0005794 Golgi apparatus IEA,IBA --
GO:0016020 membrane IEA,IBA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with B3GNT2: view

Pathways & Interactions for B3GNT2 Gene

genes like me logo Genes that share pathways with B3GNT2: view

UniProtKB/Swiss-Prot Q9NY97-B3GN2_HUMAN

  • Pathway: Protein modification; protein glycosylation.

Gene Ontology (GO) - Biological Process for B3GNT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006486 protein glycosylation IEA,IBA --
GO:0006493 protein O-linked glycosylation IBA --
GO:0007411 axon guidance IEA --
GO:0007608 sensory perception of smell IEA --
GO:0016266 O-glycan processing TAS --
genes like me logo Genes that share ontologies with B3GNT2: view

No data available for SIGNOR curated interactions for B3GNT2 Gene

Drugs & Compounds for B3GNT2 Gene

No Compound Related Data Available

Transcripts for B3GNT2 Gene

mRNA/cDNA for B3GNT2 Gene

Unigene Clusters for B3GNT2 Gene

UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for B3GNT2

Alternative Splicing Database (ASD) splice patterns (SP) for B3GNT2 Gene

No ASD Table

Relevant External Links for B3GNT2 Gene

GeneLoc Exon Structure for
B3GNT2
ECgene alternative splicing isoforms for
B3GNT2

Expression for B3GNT2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for B3GNT2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for B3GNT2 Gene

This gene is overexpressed in Serum (47.4) and Plasma (15.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for B3GNT2 Gene



Protein tissue co-expression partners for B3GNT2 Gene

NURSA nuclear receptor signaling pathways regulating expression of B3GNT2 Gene:

B3GNT2

SOURCE GeneReport for Unigene cluster for B3GNT2 Gene:

Hs.173203

mRNA Expression by UniProt/SwissProt for B3GNT2 Gene:

Q9NY97-B3GN2_HUMAN
Tissue specificity: Ubiquitous.

Evidence on tissue expression from TISSUES for B3GNT2 Gene

  • Nervous system(4.1)
  • Bone marrow(4)
genes like me logo Genes that share expression patterns with B3GNT2: view

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for B3GNT2 Gene

Orthologs for B3GNT2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for B3GNT2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia B3GNT2 34 33
  • 99.66 (n)
OneToOne
dog
(Canis familiaris)
Mammalia B3GNT2 34 33
  • 89.25 (n)
OneToOne
cow
(Bos Taurus)
Mammalia B3GNT2 34 33
  • 87.91 (n)
OneToMany
-- 34
  • 85 (a)
OneToMany
mouse
(Mus musculus)
Mammalia B3gnt2 16 34 33
  • 84.97 (n)
rat
(Rattus norvegicus)
Mammalia B3gnt2 33
  • 84.47 (n)
oppossum
(Monodelphis domestica)
Mammalia B3GNT2 34
  • 81 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia B3GNT2 34
  • 80 (a)
OneToOne
chicken
(Gallus gallus)
Aves B3GNT2 34 33
  • 74.14 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia B3GNT2 34
  • 75 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia b3gnt2 33
  • 67.34 (n)
Str.7170 33
zebrafish
(Danio rerio)
Actinopterygii b3gnt2b 34 33
  • 60.82 (n)
OneToMany
b3gnt2a 34
  • 53 (a)
OneToMany
B3GNT2 (2 of 4) 34
  • 40 (a)
OneToMany
B3GNT2 (3 of 4) 34
  • 35 (a)
OneToMany
wufa55h04 33
sea squirt
(Ciona savignyi)
Ascidiacea CSA.163 34
  • 33 (a)
OneToMany
Species where no ortholog for B3GNT2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for B3GNT2 Gene

ENSEMBL:
Gene Tree for B3GNT2 (if available)
TreeFam:
Gene Tree for B3GNT2 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for B3GNT2: view image

Paralogs for B3GNT2 Gene

(8) SIMAP similar genes for B3GNT2 Gene using alignment to 1 proteins:

  • B3GN2_HUMAN

Pseudogenes.org Pseudogenes for B3GNT2 Gene

genes like me logo Genes that share paralogs with B3GNT2: view

Variants for B3GNT2 Gene

Sequence variations from dbSNP and Humsavar for B3GNT2 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000026275 -- 62,214,248(+) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000065201 -- 62,213,040(+) G/C genic_upstream_transcript_variant, intron_variant
rs1000087316 -- 62,220,543(+) A/G intron_variant
rs1000103210 -- 62,221,937(+) T/C intron_variant
rs1000148909 -- 62,209,182(+) A/G genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for B3GNT2 Gene

Variant ID Type Subtype PubMed ID
nsv1000005 CNV gain 25217958
nsv1143939 CNV deletion 24896259
nsv582123 CNV gain 21841781
nsv7313 OTHER inversion 18451855

Variation tolerance for B3GNT2 Gene

Residual Variation Intolerance Score: 36.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.83; 17.35% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for B3GNT2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
B3GNT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for B3GNT2 Gene

Disorders for B3GNT2 Gene

MalaCards: The human disease database

(2) MalaCards diseases for B3GNT2 Gene - From: DISEASES

Disorder Aliases PubMed IDs
kidney fibrosarcoma
  • fibrosarcoma of the kidney
walker-warburg syndrome
  • hydrocephalus, agyria, and retinal dysplasia
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for B3GNT2

genes like me logo Genes that share disorders with B3GNT2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for B3GNT2 Gene

Publications for B3GNT2 Gene

  1. Identification and characterization of three novel beta 1,3-N-acetylglucosaminyltransferases structurally related to the beta 1,3-galactosyltransferase family. (PMID: 11042166) Shiraishi N … Sasaki K (The Journal of biological chemistry 2001) 2 3 4 22 58
  2. A beta-1,3-N-acetylglucosaminyltransferase with poly-N-acetyllactosamine synthase activity is structurally related to beta-1,3-galactosyltransferases. (PMID: 9892646) Zhou D … Hennet T (Proceedings of the National Academy of Sciences of the United States of America 1999) 2 3 4 22 58
  3. B4GAT1 is the priming enzyme for the LARGE-dependent functional glycosylation of α-dystroglycan. (PMID: 25279697) Praissman JL … Wells L (eLife 2014) 3 4 58
  4. Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population. (PMID: 22446963) Okada Y … Yamamoto K (Nature genetics 2012) 3 44 58
  5. Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci. (PMID: 20062062) Australo-Anglo-American Spondyloarthritis Consortium (TASC) … Brown MA (Nature genetics 2010) 3 44 58

Products for B3GNT2 Gene

Sources for B3GNT2 Gene

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