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Aliases for B3GNT10 Gene

Aliases for B3GNT10 Gene

  • UDP-GlcNAc:BetaGal Beta-1,3-N-Acetylglucosaminyltransferase 10 (Putative) 2 3 5
  • UDP-GlcNAc:BetaGal Beta-1,3-N-Acetylglucosaminyltransferase 5 Pseudogene 3 4
  • Putative UDP-GlcNAc:BetaGal Beta-1,3-N-Acetylglucosaminyltransferase LOC402377 4
  • EC 2.4.1.- 4

External Ids for B3GNT10 Gene

Summaries for B3GNT10 Gene

GeneCards Summary for B3GNT10 Gene

B3GNT10 (UDP-GlcNAc:BetaGal Beta-1,3-N-Acetylglucosaminyltransferase 10 (Putative)) is a Pseudogene. An important paralog of this gene is B3GALT4.

UniProtKB/Swiss-Prot for B3GNT10 Gene

  • Putative glycosyltransferase.

Additional gene information for B3GNT10 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for B3GNT10 Gene

Genomics for B3GNT10 Gene

GeneHancer (GH) Regulatory Elements for B3GNT10 Gene

Promoters and enhancers for B3GNT10 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J120791 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 +0.4 409 3.6 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 B3GNT10 PIR59216 FBXW2 CUTALP CNTRL PSMD5
GH09J120923 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.8 +138.4 138430 15.2 HDGF PKNOX1 SMAD1 ARID4B SIN3A FEZF1 IRF4 YY1 ZNF207 ZNF143 TRAF1 CUTALP PSMD5 FBXW2 B3GNT10 CNTRL
GH09J120783 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 -8.5 -8506 1 ELF3 SOX13 MXI1 PKNOX1 FOXA2 MAX CEBPG RFX5 RCOR1 CREM MEGF9 TRAF1 FBXW2 B3GNT10 AHCYP2
GH09J120778 Enhancer 0.9 ENCODE 0.4 -13.5 -13459 1.1 FOXA2 MLX ARID4B YY1 SLC30A9 NFKBIZ RXRA SP5 REST PPARG MEGF9 FBXW2 B3GNT10 AHCYP2
GH09J120729 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -61.6 -61585 2.8 PKNOX1 FOXA2 MLX ARID4B BRCA1 ETS1 YY1 ELK1 FOS RUNX3 CUTALP TRAF1 CDK5RAP2 AHCYP2 B3GNT10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around B3GNT10 on UCSC Golden Path with GeneCards custom track

Genomic Locations for B3GNT10 Gene

Genomic Locations for B3GNT10 Gene
chr9:120,792,403-120,799,918
(GRCh38/hg38)
Size:
7,516 bases
Orientation:
Plus strand
chr9:123,555,775-123,561,848
(GRCh37/hg19)

Genomic View for B3GNT10 Gene

Genes around B3GNT10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
B3GNT10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for B3GNT10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for B3GNT10 Gene

Proteins for B3GNT10 Gene

  • Protein details for B3GNT10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MXE2-YI036_HUMAN
    Recommended name:
    Putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC100288842
    Protein Accession:
    A8MXE2

    Protein attributes for B3GNT10 Gene

    Size:
    369 amino acids
    Molecular mass:
    42761 Da
    Quaternary structure:
    No Data Available

neXtProt entry for B3GNT10 Gene

Post-translational modifications for B3GNT10 Gene

No Post-translational modifications

Other Protein References for B3GNT10 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for B3GNT10 Gene

Domains & Families for B3GNT10 Gene

Protein Domains for B3GNT10 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A8MXE2

UniProtKB/Swiss-Prot:

YI036_HUMAN :
  • Belongs to the glycosyltransferase 2 family.
Family:
  • Belongs to the glycosyltransferase 2 family.
genes like me logo Genes that share domains with B3GNT10: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for B3GNT10 Gene

Function for B3GNT10 Gene

Molecular function for B3GNT10 Gene

UniProtKB/Swiss-Prot Function:
Putative glycosyltransferase.

Enzyme Numbers (IUBMB) for B3GNT10 Gene

Phenotypes From GWAS Catalog for B3GNT10 Gene

Gene Ontology (GO) - Molecular Function for B3GNT10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008375 acetylglucosaminyltransferase activity IBA --
GO:0008376 acetylgalactosaminyltransferase activity IBA --
GO:0008378 galactosyltransferase activity IEA --
GO:0008532 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity IBA --
GO:0016740 transferase activity IEA --
genes like me logo Genes that share ontologies with B3GNT10: view

Phenotypes for B3GNT10 Gene

genes like me logo Genes that share phenotypes with B3GNT10: view

Animal Model Products

No data available for Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for B3GNT10 Gene

Localization for B3GNT10 Gene

Subcellular locations from UniProtKB/Swiss-Prot for B3GNT10 Gene

Golgi apparatus membrane; Single-pass type II membrane protein.

Gene Ontology (GO) - Cellular Components for B3GNT10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane IEA --
GO:0005783 endoplasmic reticulum IBA --
GO:0005794 Golgi apparatus IEA,IBA --
GO:0016020 membrane IBA,IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with B3GNT10: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for B3GNT10 Gene

Pathways & Interactions for B3GNT10 Gene

SuperPathways for B3GNT10 Gene

No Data Available

Interacting Proteins for B3GNT10 Gene

Gene Ontology (GO) - Biological Process for B3GNT10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006486 protein glycosylation IEA --
GO:0006493 protein O-linked glycosylation IBA --
GO:0030311 poly-N-acetyllactosamine biosynthetic process IBA --
genes like me logo Genes that share ontologies with B3GNT10: view

No data available for Pathways by source and SIGNOR curated interactions for B3GNT10 Gene

Drugs & Compounds for B3GNT10 Gene

No Compound Related Data Available

Transcripts for B3GNT10 Gene

mRNA/cDNA for B3GNT10 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for B3GNT10 Gene

No ASD Table

Relevant External Links for B3GNT10 Gene

GeneLoc Exon Structure for
B3GNT10
ECgene alternative splicing isoforms for
B3GNT10

Expression for B3GNT10 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for B3GNT10 Gene

Orthologs for B3GNT10 Gene

Evolution for B3GNT10 Gene

ENSEMBL:
Gene Tree for B3GNT10 (if available)
TreeFam:
Gene Tree for B3GNT10 (if available)

No data available for Orthologs for B3GNT10 Gene

Paralogs for B3GNT10 Gene

genes like me logo Genes that share paralogs with B3GNT10: view

Variants for B3GNT10 Gene

Sequence variations from dbSNP and Humsavar for B3GNT10 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000746828 -- 120,798,871(+) C/T downstream_transcript_variant
rs1001134074 -- 120,792,581(+) TTTTTTT/TTTTTTTT upstream_transcript_variant
rs1001205969 -- 120,792,819(+) T/C upstream_transcript_variant
rs1002139423 -- 120,793,236(+) G/A upstream_transcript_variant
rs1002353655 -- 120,793,544(+) G/C non_coding_transcript_variant

Additional Variant Information for B3GNT10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
B3GNT10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for B3GNT10 Gene

Disorders for B3GNT10 Gene

No disorders were found for B3GNT10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for B3GNT10 Gene

Publications for B3GNT10 Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3 4 58
  2. Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes. (PMID: 17567985) Tsuritani K … Suzuki Y (Genome research 2007) 3 58
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3

Products for B3GNT10 Gene

Sources for B3GNT10 Gene

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