Aliases for B3GAT1-DT Gene

Data sources for B3GAT1-DT Gene:

Subcategory (RNA class) for B3GAT1-DT Gene

lncRNA

Aliases for B3GAT1-DT Gene

External Ids for B3GAT1-DT Gene

Summaries for B3GAT1-DT Gene

GeneCards Summary for B3GAT1-DT Gene

B3GAT1-DT (B3GAT1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with B3GAT1-DT include Diffuse Large B-Cell Lymphoma.

Additional gene information for B3GAT1-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for B3GAT1-DT Gene

Genomics for B3GAT1-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for B3GAT1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J134409 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -0.8 -770 5 ZBTB10 ZIC2 SIN3A ZNF341 ZNF843 KLF9 SP2 GLI4 ZNF2 ZBTB48 B3GAT1 B3GAT1-DT lnc-THYN1-5 GLB1L2
GH11J134464 Enhancer 0.7 Ensembl ENCODE 19.8 +53.6 53551 3.7 RXRA HNF4A REST SP1 HNF1A TAF1 POLR2A YY1 B3GAT1-DT HSALNG0088388 HSALNG0088391 B3GAT1
GH11J134454 Enhancer 0.3 Ensembl 18.5 +43.6 43608 2.2 RFX1 PYGO2 B3GAT1-DT HSALNG0088388 B3GAT1 HSALNG0088391
GH11J134459 Enhancer 0.3 Ensembl 18.5 +47.5 47517 0.4 POLR2A B3GAT1-DT HSALNG0088388 HSALNG0088391 B3GAT1
GH11J134460 Enhancer 0.2 Ensembl 18 +48.1 48116 0.4 B3GAT1-DT HSALNG0088388 HSALNG0088391 B3GAT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around B3GAT1-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for B3GAT1-DT Gene

Latest Assembly
chr11:134,412,284-134,531,648
(GRCh38/hg38)
Size:
119,365 bases
Orientation:
Plus strand

Previous Assembly
chr11:134,306,376-134,375,555
(GRCh37/hg19 by Entrez Gene)
Size:
69,180 bases
Orientation:
Plus strand

chr11:134,306,367-134,375,555
(GRCh37/hg19 by Ensembl)
Size:
69,189 bases
Orientation:
Plus strand

Genomic View for B3GAT1-DT Gene

Genes around B3GAT1-DT on UCSC Golden Path with GeneCards custom track
B3GAT1-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
B3GAT1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for B3GAT1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for B3GAT1-DT Gene

Proteins for B3GAT1-DT Gene

Post-translational modifications for B3GAT1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for B3GAT1-DT Gene

Domains & Families for B3GAT1-DT Gene

Gene Families for B3GAT1-DT Gene

genes like me logo Genes that share domains with B3GAT1-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for B3GAT1-DT Gene

Function for B3GAT1-DT Gene

Phenotypes From GWAS Catalog for B3GAT1-DT Gene

Phenotypes for B3GAT1-DT Gene

genes like me logo Genes that share phenotypes with B3GAT1-DT: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for B3GAT1-DT Gene

Localization for B3GAT1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for B3GAT1-DT Gene

Pathways & Interactions for B3GAT1-DT Gene

PathCards logo

SuperPathways for B3GAT1-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for B3GAT1-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for B3GAT1-DT Gene

Drugs & Compounds for B3GAT1-DT Gene

No Compound Related Data Available

Transcripts for B3GAT1-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for B3GAT1-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BFEC6_9606 lncRNA 3679 3

Ensembl: ENST00000528482 (view in UCSC) ,

LNCipedia: lnc-GLB1L2-1:4,

NONCODE: NONHSAT025265.2,

URS000075E9E3_9606 lncRNA 2743 3

RefSeq: NR_033852,

LNCipedia: lnc-GLB1L2-1:12,

NONCODE: NONHSAT025263.2,

URS0000EF52EF_9606 lncRNA 2775 1

Ensembl: ENST00000531319 (view in UCSC) ,

URS0000EF4B19_9606 lncRNA 1996 1

Ensembl: ENST00000533390 (view in UCSC) ,

URS0000EF5066_9606 lncRNA 1278 1

Ensembl: ENST00000653028 (view in UCSC) ,

B3GAT1-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for B3GAT1-DT Gene

2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for B3GAT1-DT Gene

No ASD Table

Relevant External Links for B3GAT1-DT Gene

GeneLoc Exon Structure for
B3GAT1-DT

Expression for B3GAT1-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for B3GAT1-DT

SOURCE GeneReport for Unigene cluster for B3GAT1-DT Gene:

Hs.504390
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for B3GAT1-DT Gene

Orthologs for B3GAT1-DT Gene

Evolution for B3GAT1-DT Gene

ENSEMBL:
Gene Tree for B3GAT1-DT (if available)
TreeFam:
Gene Tree for B3GAT1-DT (if available)

No data available for Orthologs for B3GAT1-DT Gene

Paralogs for B3GAT1-DT Gene

No data available for Paralogs for B3GAT1-DT Gene

Variants for B3GAT1-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for B3GAT1-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for B3GAT1-DT Gene

Variant ID Type Subtype PubMed ID
dgv1304n100 CNV gain 25217958
dgv1306n100 CNV gain 25217958
dgv1307n100 CNV gain 25217958
dgv1308n100 CNV gain 25217958
dgv1309n100 CNV gain 25217958
dgv172n27 CNV gain 19166990
dgv2206n54 CNV gain 21841781
dgv2207n54 CNV gain 21841781
dgv2208n54 CNV gain 21841781
dgv2209n54 CNV loss 21841781
dgv238e214 CNV gain 21293372
dgv427e212 CNV gain 25503493
dgv4e196 CNV duplication 17116639
dgv55e55 CNV gain 17911159
esv1003035 CNV deletion 20482838
esv1458612 CNV deletion 17803354
esv1584588 CNV deletion 17803354
esv1608288 CNV deletion 17803354
esv2106131 CNV deletion 18987734
esv2481891 CNV deletion 19546169
esv2599586 CNV insertion 19546169
esv2663414 CNV deletion 23128226
esv2745332 CNV deletion 23290073
esv2745333 CNV deletion 23290073
esv2745334 CNV deletion 23290073
esv2745335 CNV deletion 23290073
esv2745336 CNV deletion 23290073
esv2745337 CNV deletion 23290073
esv2745338 CNV deletion 23290073
esv2745339 CNV deletion 23290073
esv2745340 CNV deletion 23290073
esv2745342 CNV deletion 23290073
esv2750984 CNV gain 17911159
esv2760186 CNV gain 21179565
esv2760555 CNV gain+loss 21179565
esv27831 CNV gain 19812545
esv3548563 CNV deletion 23714750
esv3548568 CNV deletion 23714750
esv3548569 CNV deletion 23714750
esv3548570 CNV deletion 23714750
esv3579994 CNV loss 25503493
esv3628169 CNV gain 21293372
esv3628172 CNV gain 21293372
esv3628174 CNV gain 21293372
esv3628177 CNV loss 21293372
esv3628178 CNV gain 21293372
esv3892117 CNV loss 25118596
esv3892118 CNV gain 25118596
esv3892119 CNV gain 25118596
esv989808 CNV deletion 20482838
nsv1069624 CNV deletion 25765185
nsv1115421 CNV duplication 24896259
nsv1151516 CNV insertion 26484159
nsv39776 CNV deletion 16902084
nsv468928 CNV loss 19166990
nsv469994 CNV loss 18288195
nsv517742 CNV gain+loss 19592680
nsv521581 CNV gain 19592680
nsv521623 CNV gain 19592680
nsv556608 CNV gain 21841781
nsv556612 CNV gain 21841781
nsv556617 CNV loss 21841781
nsv556638 CNV loss 21841781
nsv556652 CNV loss 21841781
nsv826151 CNV gain 20364138
nsv957883 CNV deletion 24416366

Additional Variant Information for B3GAT1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
B3GAT1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for B3GAT1-DT Gene

Disorders for B3GAT1-DT Gene

MalaCards: The human disease database

(1) MalaCards diseases for B3GAT1-DT Gene - From: LNC

Disorder Aliases PubMed IDs
diffuse large b-cell lymphoma
  • large b-cell diffuse lymphoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for B3GAT1-DT

Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with B3GAT1-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for B3GAT1-DT Gene

Publications for B3GAT1-DT Gene

  1. Identification of prognostic long noncoding RNAs associated with spontaneous regression of neuroblastoma. (PMID: 32216054) Meng X … Feng J (Cancer medicine 2020) 2 3
  2. Copy number variation analysis on a non-Hodgkin lymphoma case-control study identifies an 11q25 duplication associated with diffuse large B-cell lymphoma. (PMID: 25133503) Conde L … Skibola CF (PloS one 2014) 74
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for B3GAT1-DT Gene

Products for B3GAT1-DT Gene

Sources for B3GAT1-DT Gene