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Aliases for B3GAT1-DT Gene
Data sources for B3GAT1-DT Gene:
Subcategory (RNA class) for B3GAT1-DT Gene
lncRNA
Aliases for B3GAT1-DT Gene
- B3GAT1 Divergent Transcript (HGNC, NCBI Entrez Gene)
- B3GAT1 Diverget Transcript (NCBI Entrez Gene, Ensembl)
- NONHSAG010109.2 (NONCODE)
- HSALNG0088390 (LncBook)
- HSALNG0088389 (LncBook)
- Lnc-GLB1L2-1 (LNCipedia)
- B3GAT1-DT (Ensembl)
- LOC283177 (HGNC)
External Ids for B3GAT1-DT Gene
- HGNC: 27449
- NCBI Entrez Gene: 283177
- Ensembl: ENSG00000255545
Summaries for B3GAT1-DT Gene
GeneCards Summary for B3GAT1-DT Gene
B3GAT1-DT (B3GAT1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with B3GAT1-DT include Diffuse Large B-Cell Lymphoma.
Additional gene information for B3GAT1-DT Gene
- HGNC (27449)
- NCBI Entrez Gene (283177)
- Ensembl (ENSG00000255545)
- Open Targets Platform(ENSG00000255545)
- Search for B3GAT1-DT at DataMed
- Search for B3GAT1-DT at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for B3GAT1-DT Gene
Genomics for B3GAT1-DT Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for B3GAT1-DT Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J134409 | Promoter/Enhancer | 1.9 | EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER | 250.7 | -0.8 | -770 | 5 | ZBTB10 ZIC2 SIN3A ZNF341 ZNF843 KLF9 SP2 GLI4 ZNF2 ZBTB48 | B3GAT1 B3GAT1-DT lnc-THYN1-5 GLB1L2 | |
| GH11J134464 | Enhancer | 0.7 | Ensembl ENCODE | 19.8 | +53.6 | 53551 | 3.7 | RXRA HNF4A REST SP1 HNF1A TAF1 POLR2A YY1 | B3GAT1-DT HSALNG0088388 HSALNG0088391 B3GAT1 | |
| GH11J134454 | Enhancer | 0.3 | Ensembl | 18.5 | +43.6 | 43608 | 2.2 | RFX1 PYGO2 | B3GAT1-DT HSALNG0088388 B3GAT1 HSALNG0088391 | |
| GH11J134459 | Enhancer | 0.3 | Ensembl | 18.5 | +47.5 | 47517 | 0.4 | POLR2A | B3GAT1-DT HSALNG0088388 HSALNG0088391 B3GAT1 | |
| GH11J134460 | Enhancer | 0.2 | Ensembl | 18 | +48.1 | 48116 | 0.4 | B3GAT1-DT HSALNG0088388 HSALNG0088391 B3GAT1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around B3GAT1-DT on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for B3GAT1-DT Gene
Latest Assembly
- chr11:134,412,284-134,531,648
- (GRCh38/hg38)
- Size:
- 119,365 bases
- Orientation:
- Plus strand
Previous Assembly
- chr11:134,306,376-134,375,555
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 69,180 bases
- Orientation:
- Plus strand
- chr11:134,306,367-134,375,555
- (GRCh37/hg19 by Ensembl)
- Size:
- 69,189 bases
- Orientation:
- Plus strand
Genomic View for B3GAT1-DT Gene
Genes around B3GAT1-DT on UCSC Golden Path with GeneCards custom track
B3GAT1-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q25 by HGNC
- 11q25 by Entrez Gene
- 11q25 by Ensembl
B3GAT1-DT Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for B3GAT1-DT Gene
Proteins for B3GAT1-DT Gene
Post-translational modifications for B3GAT1-DT Gene
No Post-translational modifications
No data available for DME Specific Peptides for B3GAT1-DT Gene
Domains & Families for B3GAT1-DT Gene
Gene Families for B3GAT1-DT Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for B3GAT1-DT Gene
Function for B3GAT1-DT Gene
Phenotypes From GWAS Catalog for B3GAT1-DT Gene
Phenotypes for B3GAT1-DT Gene
- GenomeRNAi human phenotypes for B3GAT1-DT:
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for B3GAT1-DT Gene
Localization for B3GAT1-DT Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for B3GAT1-DT Gene
Transcripts for B3GAT1-DT Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for B3GAT1-DT Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00008BFEC6_9606 | lncRNA | 3679 | 3 |
Ensembl: ENST00000528482 (view in UCSC) , LNCipedia: lnc-GLB1L2-1:4, NONCODE: NONHSAT025265.2, |
| URS000075E9E3_9606 | lncRNA | 2743 | 3 |
RefSeq: NR_033852, LNCipedia: lnc-GLB1L2-1:12, NONCODE: NONHSAT025263.2, |
| URS0000EF52EF_9606 | lncRNA | 2775 | 1 |
Ensembl: ENST00000531319 (view in UCSC) , |
| URS0000EF4B19_9606 | lncRNA | 1996 | 1 |
Ensembl: ENST00000533390 (view in UCSC) , |
| URS0000EF5066_9606 | lncRNA | 1278 | 1 |
Ensembl: ENST00000653028 (view in UCSC) , |
B3GAT1-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for B3GAT1-DT Gene
- 2 NCBI additional mRNA sequence :
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000532886 4435 nts (view in UCSC)
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for B3GAT1-DT Gene
- GeneLoc Exon Structure for
- B3GAT1-DT
Expression for B3GAT1-DT Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for B3GAT1-DT
SOURCE GeneReport for Unigene cluster for B3GAT1-DT Gene:
Hs.504390
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for B3GAT1-DT Gene
Orthologs for B3GAT1-DT Gene
No data available for Orthologs for B3GAT1-DT Gene
Paralogs for B3GAT1-DT Gene
No data available for Paralogs for B3GAT1-DT Gene
Variants for B3GAT1-DT Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for B3GAT1-DT Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- B3GAT1-DT
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for B3GAT1-DT Gene
Disorders for B3GAT1-DT Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| diffuse large b-cell lymphoma |
|
Search B3GAT1-DT in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for B3GAT1-DT
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for B3GAT1-DT Gene
Publications for B3GAT1-DT Gene
- Identification of prognostic long noncoding RNAs associated with spontaneous regression of neuroblastoma. (PMID: 32216054) Meng X … Feng J (Cancer medicine 2020) 2 3
- Copy number variation analysis on a non-Hodgkin lymphoma case-control study identifies an 11q25 duplication associated with diffuse large B-cell lymphoma. (PMID: 25133503) Conde L … Skibola CF (PloS one 2014) 74
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
No data available for Mastermind for B3GAT1-DT Gene
Products for B3GAT1-DT Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for B3GAT1-DT
- Origene Custom Protein Services for B3GAT1-DT
- Browse OriGene Inhibitory RNA Products For B3GAT1-DT
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for B3GAT1-DT
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For B3GAT1-DT
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for B3GAT1-DT
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for B3GAT1-DT
- Search GeneCopoeia for miRNA 3'UTR Target clone products for B3GAT1-DT
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for B3GAT1-DT
Sources for B3GAT1-DT Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB