Aliases for B3GALT5-AS1 Gene

Subcategory (RNA class) for B3GALT5-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for B3GALT5-AS1 Gene

  • B3GALT5 Antisense RNA 1 2 3 4 5
  • B3GALT5-AS1 2 5 165
  • C21orf88 3 4
  • Putative Uncharacterized Protein B3GALT5-AS1 4
  • Chromosome 21 Open Reading Frame 88 2
  • B3GALT5 Antisense Gene Protein 1 4
  • NONHSAG032879.2 91
  • HSALNG0133144 164

External Ids for B3GALT5-AS1 Gene

Previous HGNC Symbols for B3GALT5-AS1 Gene

  • C21orf88

Summaries for B3GALT5-AS1 Gene

GeneCards Summary for B3GALT5-AS1 Gene

B3GALT5-AS1 (B3GALT5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with B3GALT5-AS1 include Rectum Adenocarcinoma.

Additional gene information for B3GALT5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for B3GALT5-AS1 Gene

Genomics for B3GALT5-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for B3GALT5-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around B3GALT5-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for B3GALT5-AS1 Gene

Genomic Locations for B3GALT5-AS1 Gene
chr21:39,597,104-39,613,067
(GRCh38/hg38)
Size:
15,964 bases
Orientation:
Minus strand
chr21:40,969,074-40,984,749
(GRCh37/hg19)
Size:
15,676 bases
Orientation:
Minus strand

Genomic View for B3GALT5-AS1 Gene

Genes around B3GALT5-AS1 on UCSC Golden Path with GeneCards custom track
B3GALT5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
B3GALT5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for B3GALT5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for B3GALT5-AS1 Gene

Proteins for B3GALT5-AS1 Gene

  • Protein details for B3GALT5-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P59052-B3AS1_HUMAN
    Recommended name:
    Putative uncharacterized protein B3GALT5-AS1
    Protein Accession:
    P59052
    Secondary Accessions:
    • Q0VDC1
    • Q547X5

    Protein attributes for B3GALT5-AS1 Gene

    Size:
    145 amino acids
    Molecular mass:
    15706 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for B3GALT5-AS1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for B3GALT5-AS1 Gene

Post-translational modifications for B3GALT5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for B3GALT5-AS1 Gene

Domains & Families for B3GALT5-AS1 Gene

Gene Families for B3GALT5-AS1 Gene

Protein Domains for B3GALT5-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with B3GALT5-AS1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for B3GALT5-AS1 Gene

Function for B3GALT5-AS1 Gene

Phenotypes From GWAS Catalog for B3GALT5-AS1 Gene

genes like me logo Genes that share phenotypes with B3GALT5-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for B3GALT5-AS1 Gene

Localization for B3GALT5-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for B3GALT5-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for B3GALT5-AS1 Gene

Pathways & Interactions for B3GALT5-AS1 Gene

PathCards logo

SuperPathways for B3GALT5-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for B3GALT5-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for B3GALT5-AS1 Gene

Drugs & Compounds for B3GALT5-AS1 Gene

No Compound Related Data Available

Transcripts for B3GALT5-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for B3GALT5-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B4E2_9606 lncRNA 1451 2

HGNC: 16424,

RefSeq: NR_026542,

URS00007C777D_9606 lncRNA 1071 2

Ensembl: ENST00000380612 (view in UCSC) ,

LNCipedia: B3GALT5-AS1:5,

URS0000EF34DB_9606 lncRNA 4202 1

Ensembl: ENST00000661806 (view in UCSC) ,

URS0000EF609D_9606 lncRNA 3846 1

Ensembl: ENST00000670049 (view in UCSC) ,

URS0000EF1B1C_9606 lncRNA 3106 1

Ensembl: ENST00000329618 (view in UCSC) ,

B3GALT5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for B3GALT5-AS1 Gene

1 REFSEQ mRNAs :
9 NCBI additional mRNA sequence :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for B3GALT5-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for B3GALT5-AS1 Gene

No ASD Table

Relevant External Links for B3GALT5-AS1 Gene

GeneLoc Exon Structure for
B3GALT5-AS1

Expression for B3GALT5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for B3GALT5-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for B3GALT5-AS1

mRNA Expression by UniProt/SwissProt for B3GALT5-AS1 Gene:

P59052-B3AS1_HUMAN
Tissue specificity: Ubiquitous.
genes like me logo Genes that share expression patterns with B3GALT5-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for B3GALT5-AS1 Gene

Orthologs for B3GALT5-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for B3GALT5-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C21orf88 31
  • 96 (a)
OneToOne
Species where no ortholog for B3GALT5-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for B3GALT5-AS1 Gene

ENSEMBL:
Gene Tree for B3GALT5-AS1 (if available)
TreeFam:
Gene Tree for B3GALT5-AS1 (if available)

Paralogs for B3GALT5-AS1 Gene

No data available for Paralogs for B3GALT5-AS1 Gene

Variants for B3GALT5-AS1 Gene

Additional dbSNP identifiers (rs#s) for B3GALT5-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for B3GALT5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv27418 CNV gain 19812545
esv34779 CNV gain 17911159
esv3568195 CNV loss 25503493
esv3647020 CNV gain 21293372
nsv1061454 CNV gain 25217958
nsv478120 CNV novel sequence insertion 20440878
nsv587484 CNV loss 21841781

Variation tolerance for B3GALT5-AS1 Gene

Gene Damage Index Score: 1.47; 28.64% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for B3GALT5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
B3GALT5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for B3GALT5-AS1 Gene

Disorders for B3GALT5-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for B3GALT5-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
rectum adenocarcinoma
  • rectal adenocarcinoma
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with B3GALT5-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for B3GALT5-AS1 Gene

Publications for B3GALT5-AS1 Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A … Antonarakis SE (Genomics 2002) 2 3 4
  2. Abnormally expressed long noncoding RNA B3GALT5-AS1 may serve as a biomarker for the diagnostic and prognostic of gastric cancer. (PMID: 31338903) Feng W … Ju S (Journal of cellular biochemistry 2020) 2 3
  3. The pivotal role and mechanism of long non-coding RNA B3GALT5-AS1 in the diagnosis of acute pancreatitis. (PMID: 31177837) Wang L … Wang Y (Artificial cells, nanomedicine, and biotechnology 2019) 2 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  5. Long noncoding RNA B3GALT5-AS1 suppresses colon cancer liver metastasis via repressing microRNA-203. (PMID: 30530918) Wang L … He Y (Aging 2018) 3

Products for B3GALT5-AS1 Gene

Sources for B3GALT5-AS1 Gene