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Aliases for B3GALT5-AS1 Gene
Subcategory (RNA class) for B3GALT5-AS1 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for B3GALT5-AS1 Gene
External Ids for B3GALT5-AS1 Gene
- HGNC: 16424
- Entrez Gene: 114041
- Ensembl: ENSG00000184809
- UniProtKB: P59052
Previous HGNC Symbols for B3GALT5-AS1 Gene
- C21orf88
Summaries for B3GALT5-AS1 Gene
GeneCards Summary for B3GALT5-AS1 Gene
B3GALT5-AS1 (B3GALT5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with B3GALT5-AS1 include Rectum Adenocarcinoma.
Additional gene information for B3GALT5-AS1 Gene
- HGNC(16424)
- Entrez Gene(114041)
- Ensembl(ENSG00000184809)
- UniProtKB(P59052)
- Open Targets Platform(ENSG00000184809)
- Search for B3GALT5-AS1 at DataMed
- Search for B3GALT5-AS1 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for B3GALT5-AS1 Gene
Genomics for B3GALT5-AS1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for B3GALT5-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around B3GALT5-AS1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for B3GALT5-AS1 Gene
Genomic Locations for B3GALT5-AS1 Gene
- chr21:39,597,104-39,613,067
- (GRCh38/hg38)
- Size:
- 15,964 bases
- Orientation:
- Minus strand
- chr21:40,969,074-40,984,749
- (GRCh37/hg19)
- Size:
- 15,676 bases
- Orientation:
- Minus strand
Genomic View for B3GALT5-AS1 Gene
Genes around B3GALT5-AS1 on UCSC Golden Path with GeneCards custom track
B3GALT5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 21q22.2 by HGNC
- 21q22.2 by Entrez Gene
- 21q22.2 by Ensembl
B3GALT5-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for B3GALT5-AS1 Gene
Proteins for B3GALT5-AS1 Gene
-
Protein details for B3GALT5-AS1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P59052-B3AS1_HUMAN
- Recommended name:
- Putative uncharacterized protein B3GALT5-AS1
- Protein Accession:
- P59052
- Q0VDC1
- Q547X5
Protein attributes for B3GALT5-AS1 Gene
- Size:
- 145 amino acids
- Molecular mass:
- 15706 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for B3GALT5-AS1 Gene
No Post-translational modifications
Antibody Products
- antibodies-online: Show 15 available C21ORF88 Antibodies ranked by validation data
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for B3GALT5-AS1
- Origene Custom Protein Services for B3GALT5-AS1
No data available for DME Specific Peptides for B3GALT5-AS1 Gene
Domains & Families for B3GALT5-AS1 Gene
Gene Families for B3GALT5-AS1 Gene
- HGNC:
Protein Domains for B3GALT5-AS1 Gene
- ProtoNet:
No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for B3GALT5-AS1 Gene
Function for B3GALT5-AS1 Gene
Phenotypes From GWAS Catalog for B3GALT5-AS1 Gene
Phenotypes for B3GALT5-AS1 Gene
- GenomeRNAi human phenotypes for B3GALT5-AS1:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for B3GALT5-AS1
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for B3GALT5-AS1
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for B3GALT5-AS1
- Browse OriGene Inhibitory RNA Products For B3GALT5-AS1
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for B3GALT5-AS1
Clone Products
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for B3GALT5-AS1
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for B3GALT5-AS1 Gene
Localization for B3GALT5-AS1 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for B3GALT5-AS1 Gene
Transcripts for B3GALT5-AS1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for B3GALT5-AS1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075B4E2_9606 | lncRNA | 1451 | 2 |
HGNC: 16424, RefSeq: NR_026542, |
| URS00007C777D_9606 | lncRNA | 1071 | 2 |
Ensembl: ENST00000380612 (view in UCSC) , LNCipedia: B3GALT5-AS1:5, |
| URS0000EF34DB_9606 | lncRNA | 4202 | 1 |
Ensembl: ENST00000661806 (view in UCSC) , |
| URS0000EF609D_9606 | lncRNA | 3846 | 1 |
Ensembl: ENST00000670049 (view in UCSC) , |
| URS0000EF1B1C_9606 | lncRNA | 3106 | 1 |
Ensembl: ENST00000329618 (view in UCSC) , |
B3GALT5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for B3GALT5-AS1 Gene
- 1 REFSEQ mRNAs :
- 9 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for B3GALT5-AS1
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for B3GALT5-AS1
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for B3GALT5-AS1
- Browse OriGene Inhibitory RNA Products For B3GALT5-AS1
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for B3GALT5-AS1
Clone Products
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for B3GALT5-AS1
Relevant External Links for B3GALT5-AS1 Gene
- GeneLoc Exon Structure for
- B3GALT5-AS1
Expression for B3GALT5-AS1 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for B3GALT5-AS1
mRNA Expression by UniProt/SwissProt for B3GALT5-AS1 Gene:
P59052-B3AS1_HUMAN
Tissue specificity:
Ubiquitous.
Primer Products
-
OriGene qPCR primer pairs for B3GALT5-AS1
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for B3GALT5-AS1 Gene
Orthologs for B3GALT5-AS1 Gene
This gene was present in the common ancestor of human and chimp.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | C21orf88 31 |
|
OneToOne |
- Species where no ortholog for B3GALT5-AS1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- Cow (Bos Taurus)
- Dog (Canis familiaris)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Lizard (Anolis carolinensis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Mouse (Mus musculus)
- Oppossum (Monodelphis domestica)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Platypus (Ornithorhynchus anatinus)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
- Zebrafish (Danio rerio)
Paralogs for B3GALT5-AS1 Gene
No data available for Paralogs for B3GALT5-AS1 Gene
Variants for B3GALT5-AS1 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv27418 | CNV | gain | 19812545 |
| esv34779 | CNV | gain | 17911159 |
| esv3568195 | CNV | loss | 25503493 |
| esv3647020 | CNV | gain | 21293372 |
| nsv1061454 | CNV | gain | 25217958 |
| nsv478120 | CNV | novel sequence insertion | 20440878 |
| nsv587484 | CNV | loss | 21841781 |
Gene Damage Index Score:
1.47;
28.64% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for B3GALT5-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- B3GALT5-AS1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for B3GALT5-AS1 Gene
Disorders for B3GALT5-AS1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| rectum adenocarcinoma |
|
|
Search B3GALT5-AS1 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for B3GALT5-AS1
No data available for UniProtKB/Swiss-Prot and Genatlas for B3GALT5-AS1 Gene
Publications for B3GALT5-AS1 Gene
- Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A … Antonarakis SE (Genomics 2002) 2 3 4
- Abnormally expressed long noncoding RNA B3GALT5-AS1 may serve as a biomarker for the diagnostic and prognostic of gastric cancer. (PMID: 31338903) Feng W … Ju S (Journal of cellular biochemistry 2020) 2 3
- The pivotal role and mechanism of long non-coding RNA B3GALT5-AS1 in the diagnosis of acute pancreatitis. (PMID: 31177837) Wang L … Wang Y (Artificial cells, nanomedicine, and biotechnology 2019) 2 3
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
- Long noncoding RNA B3GALT5-AS1 suppresses colon cancer liver metastasis via repressing microRNA-203. (PMID: 30530918) Wang L … He Y (Aging 2018) 3
Products for B3GALT5-AS1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for B3GALT5-AS1
- Origene Custom Protein Services for B3GALT5-AS1
- Origene shrna and RNAi products in human, mouse, rat for B3GALT5-AS1
- Browse OriGene Inhibitory RNA Products For B3GALT5-AS1
- OriGene qPCR primer pairs for B3GALT5-AS1
- Browse CRISPR knockouts for B3GALT5-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For B3GALT5-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
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- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- VectorBuilder Custom and pre-made DNA vectors for B3GALT5-AS1 (ie. gene expression, shRNA knockdown, CRISPR)
- VectorBuilder Viral vectors for B3GALT5-AS1 (ie. lentivirus, AAV, adenovirus)
- VectorBuilder CRISPR vectors for B3GALT5-AS1 (ie. knockout, knockin, CRISPRa, CRISPRi)
- VectorBuilder Virus packaging for B3GALT5-AS1 CRISPR vectors (ie. lentivirus, AAV, adenovirus)
- VectorBuilder Stable cell line generation for B3GALT5-AS1
- antibodies-online: Show 15 available C21ORF88 Antibodies ranked by validation data
- antibodies-online: Search results for available C21ORF88 related products ranked by validation data
- antibodies-online: Search results for available C21ORF88 related products ranked by validation data
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for B3GALT5-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for B3GALT5-AS1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for B3GALT5-AS1
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for B3GALT5-AS1
Sources for B3GALT5-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB