Aliases for B3GALT5-AS1 Gene
Subcategory (RNA class) for B3GALT5-AS1 Gene
non-coding RNA
Quality Score for this RNA gene is
13
Aliases for B3GALT5-AS1 Gene
External Ids for B3GALT5-AS1 Gene
- HGNC: 16424
- Entrez Gene: 114041
- Ensembl: ENSG00000184809
- UniProtKB: P59052
Previous HGNC Symbols for B3GALT5-AS1 Gene
- C21orf88
Summaries for B3GALT5-AS1 Gene
GeneCards Summary for B3GALT5-AS1 Gene
B3GALT5-AS1 (B3GALT5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.
Additional gene information for B3GALT5-AS1 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for B3GALT5-AS1 Gene
Genomics for B3GALT5-AS1 Gene
GeneHancer (GH) Regulatory Elements for B3GALT5-AS1 Gene
Promoters and enhancers for B3GALT5-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around B3GALT5-AS1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for B3GALT5-AS1 Gene
Genomic Locations for B3GALT5-AS1 Gene
- chr21:39,597,147-39,612,822
- (GRCh38/hg38)
- Size:
- 15,676 bases
- Orientation:
- Minus strand
- chr21:40,969,074-40,984,749
- (GRCh37/hg19)
- Size:
- 15,676 bases
- Orientation:
- Minus strand
Genomic View for B3GALT5-AS1 Gene
Genes around B3GALT5-AS1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 21q22.2 by Entrez Gene
- 21q22.2 by HGNC
- 21q22.2 by Ensembl
B3GALT5-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for B3GALT5-AS1 Gene
Proteins for B3GALT5-AS1 Gene
-
Protein details for B3GALT5-AS1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P59052-B3AS1_HUMAN
- Recommended name:
- Putative uncharacterized protein B3GALT5-AS1
- Protein Accession:
- P59052
- Q0VDC1
- Q547X5
Protein attributes for B3GALT5-AS1 Gene
- Size:
- 145 amino acids
- Molecular mass:
- 15706 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for B3GALT5-AS1 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for B3GALT5-AS1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for B3GALT5-AS1
- Origene Custom Protein Services for B3GALT5-AS1
- Search GeneTex for Proteins for B3GALT5-AS1
Assay Products
No data available for DME Specific Peptides for B3GALT5-AS1 Gene
Domains & Families for B3GALT5-AS1 Gene
Protein Domains for B3GALT5-AS1 Gene
- ProtoNet:
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for B3GALT5-AS1 Gene
Function for B3GALT5-AS1 Gene
Phenotypes From GWAS Catalog for B3GALT5-AS1 Gene
Phenotypes for B3GALT5-AS1 Gene
- GenomeRNAi human phenotypes for B3GALT5-AS1:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for B3GALT5-AS1
-
CRISPR Products
- Browse CRISPR knockouts for B3GALT5-AS1
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- genomics-online: gRNA clones - Search results for available C21orf88 gene related products
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for B3GALT5-AS1
- Browse OriGene Inhibitory RNA Products For B3GALT5-AS1
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for B3GALT5-AS1
- genomics-online: shRNA clones - Search results for available C21orf88 gene related products
Clone Products
- GenScript: Custom all cDNA clones Services for B3GALT5-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for B3GALT5-AS1
- genomics-online: cdna clones - Search results for available C21orf88 gene related products
- orf clones - Search results for available C21orf88 gene related products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for B3GALT5-AS1 Gene
Localization for B3GALT5-AS1 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 2 |
| mitochondrion | 2 |
| peroxisome | 1 |
| nucleus | 1 |
| cytosol | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for B3GALT5-AS1 Gene
Transcripts for B3GALT5-AS1 Gene
mRNA/cDNA for B3GALT5-AS1 Gene
- (1) REFSEQ mRNAs :
- (4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000489821 1159 bps (uc062agd.1)
- ENST00000380612 1071 bps (uc010gok.6)
- ENST00000380604 632 bps (uc062age.1)
- ENST00000329618 1357 bps (uc002yyd.6)
- (6) RNA Central transcripts :
CRISPR Products
- Browse CRISPR knockouts for B3GALT5-AS1
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for B3GALT5-AS1
- genomics-online: gRNA clones - Search results for available C21orf88 gene related products
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for B3GALT5-AS1
- Browse OriGene Inhibitory RNA Products For B3GALT5-AS1
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for B3GALT5-AS1
- genomics-online: shRNA clones - Search results for available C21orf88 gene related products
Clone Products
- GenScript: Custom all cDNA clones Services for B3GALT5-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for B3GALT5-AS1
- genomics-online: cdna clones - Search results for available C21orf88 gene related products
- orf clones - Search results for available C21orf88 gene related products
Relevant External Links for B3GALT5-AS1 Gene
- GeneLoc Exon Structure for
- B3GALT5-AS1
- ECgene alternative splicing isoforms for
- B3GALT5-AS1
Expression for B3GALT5-AS1 Gene
mRNA Expression by UniProt/SwissProt for B3GALT5-AS1 Gene:
P59052-B3AS1_HUMAN
Tissue specificity:
Ubiquitous.
Primer Products
-
OriGene qPCR primer pairs for B3GALT5-AS1
- genomics-online: primer clones - Search results for available C21orf88 gene related products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for B3GALT5-AS1 Gene
Orthologs for B3GALT5-AS1 Gene
This gene was present in the common ancestor of human and chimp.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | C21orf88 34 |
|
OneToOne |
- Species where no ortholog for B3GALT5-AS1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- cow (Bos Taurus)
- dog (Canis familiaris)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- mouse (Mus musculus)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for B3GALT5-AS1 Gene
No data available for Paralogs for B3GALT5-AS1 Gene
Variants for B3GALT5-AS1 Gene
| SNP ID | Clin | Chr 21 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000069272 | -- | 39,607,747(-) | G/A | intron_variant | |
| rs1000305088 | -- | 39,614,173(-) | G/A/T | upstream_transcript_variant | |
| rs1000863587 | -- | 39,602,305(-) | T/C | genic_downstream_transcript_variant, intron_variant | |
| rs1001071953 | -- | 39,609,095(-) | A/G | intron_variant | |
| rs1001128577 | -- | 39,608,427(-) | T/A | intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv27418 | CNV | gain | 19812545 |
| esv34779 | CNV | gain | 17911159 |
| esv3568195 | CNV | loss | 25503493 |
| esv3647020 | CNV | gain | 21293372 |
| nsv1061454 | CNV | gain | 25217958 |
| nsv478120 | CNV | novel sequence insertion | 20440878 |
| nsv587484 | CNV | loss | 21841781 |
Gene Damage Index Score:
1.47;
28.64% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for B3GALT5-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- B3GALT5-AS1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for B3GALT5-AS1 Gene
Disorders for B3GALT5-AS1 Gene
Additional Disease Information for B3GALT5-AS1
No disorders were found for B3GALT5-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for B3GALT5-AS1 Gene
Publications for B3GALT5-AS1 Gene
- Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A … Antonarakis SE (Genomics 2002) 2 3 4 58
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
- Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. (PMID: 20494980) Warnatz HJ … Yaspo ML (Nucleic acids research 2010) 3 58
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
Products for B3GALT5-AS1 Gene
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- Lentiviral ORF Clones
- genomics-online: cdna clones - Search results for available C21orf88 gene related products
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Sources for B3GALT5-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
- (159) GlyConnect
- (160) Aminode
- (161) GeneCopoeia
- (162) GPS-Prot
- (163) RNACentral
- (164) LncRNADisease
- (165) LOVD
- (166) miR2Disease
- (167) DiseaseEnhancer
- (168) Boster Bio
- (169) Biorbyt