Aliases for B3GALT5-AS1 Gene
Subcategory (RNA class) for B3GALT5-AS1 Gene
lncRNA
Quality Score for this RNA gene is
15
Aliases for B3GALT5-AS1 Gene
External Ids for B3GALT5-AS1 Gene
- HGNC: 16424
- Entrez Gene: 114041
- Ensembl: ENSG00000184809
- UniProtKB: P59052
Previous HGNC Symbols for B3GALT5-AS1 Gene
- C21orf88
Summaries for B3GALT5-AS1 Gene
GeneCards Summary for B3GALT5-AS1 Gene
B3GALT5-AS1 (B3GALT5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for B3GALT5-AS1 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for B3GALT5-AS1 Gene
Genomics for B3GALT5-AS1 Gene
GeneHancer (GH) Regulatory Elements for B3GALT5-AS1 Gene
Promoters and enhancers for B3GALT5-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around B3GALT5-AS1 on UCSC Golden Path with GeneCards custom track
Genomic Locations for B3GALT5-AS1 Gene
Genomic Locations for B3GALT5-AS1 Gene
- chr21:39,597,104-39,613,067
- (GRCh38/hg38)
- Size:
- 15,964 bases
- Orientation:
- Minus strand
- chr21:40,969,074-40,984,749
- (GRCh37/hg19)
- Size:
- 15,676 bases
- Orientation:
- Minus strand
Genomic View for B3GALT5-AS1 Gene
Genes around B3GALT5-AS1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 21q22.2 by HGNC
- 21q22.2 by Entrez Gene
- 21q22.2 by Ensembl
B3GALT5-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for B3GALT5-AS1 Gene
Proteins for B3GALT5-AS1 Gene
-
Protein details for B3GALT5-AS1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P59052-B3AS1_HUMAN
- Recommended name:
- Putative uncharacterized protein B3GALT5-AS1
- Protein Accession:
- P59052
- Q0VDC1
- Q547X5
Protein attributes for B3GALT5-AS1 Gene
- Size:
- 145 amino acids
- Molecular mass:
- 15706 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for B3GALT5-AS1 Gene
No Post-translational modifications
Antibody Products
- antibodies-online: Show 15 available C21ORF88 Antibodies ranked by validation data
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for B3GALT5-AS1
- Origene Custom Protein Services for B3GALT5-AS1
No data available for DME Specific Peptides for B3GALT5-AS1 Gene
Domains & Families for B3GALT5-AS1 Gene
Gene Families for B3GALT5-AS1 Gene
Protein Domains for B3GALT5-AS1 Gene
- ProtoNet:
No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for B3GALT5-AS1 Gene
Function for B3GALT5-AS1 Gene
Phenotypes From GWAS Catalog for B3GALT5-AS1 Gene
Phenotypes for B3GALT5-AS1 Gene
- GenomeRNAi human phenotypes for B3GALT5-AS1:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for B3GALT5-AS1
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for B3GALT5-AS1
- genomics-online: gRNA clones - Search results for available C21ORF88 gene related products
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for B3GALT5-AS1
- Browse OriGene Inhibitory RNA Products For B3GALT5-AS1
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for B3GALT5-AS1
- genomics-online: shRNA clones - Search results for available C21ORF88 gene related products
Clone Products
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for B3GALT5-AS1
- genomics-online: cdna clones - Search results for available C21ORF88 gene related products
- orf clones - Search results for available C21ORF88 gene related products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for B3GALT5-AS1 Gene
Localization for B3GALT5-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for B3GALT5-AS1 Gene
Transcripts for B3GALT5-AS1 Gene
mRNA/cDNA for B3GALT5-AS1 Gene
- (3) REFSEQ mRNAs :
- (9) Additional mRNA sequences :
- (7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000670883 2340 bps
- ENST00000380612 1071 bps (ENST00000380612.8)
- ENST00000380604 1823 bps (ENST00000380604.7)
- ENST00000661806 4202 bps
- ENST00000489821 1919 bps (ENST00000489821.4)
- (12) RNACentral transcripts :
- (5) NONCODE transcripts :
- (9) LNCipedia transcripts :
- (3) LncBook transcripts :
CRISPR Products
- Browse CRISPR knockouts for B3GALT5-AS1
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for B3GALT5-AS1
- genomics-online: gRNA clones - Search results for available C21ORF88 gene related products
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for B3GALT5-AS1
- Browse OriGene Inhibitory RNA Products For B3GALT5-AS1
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for B3GALT5-AS1
- genomics-online: shRNA clones - Search results for available C21ORF88 gene related products
Clone Products
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for B3GALT5-AS1
- genomics-online: cdna clones - Search results for available C21ORF88 gene related products
- orf clones - Search results for available C21ORF88 gene related products
Relevant External Links for B3GALT5-AS1 Gene
- GeneLoc Exon Structure for
- B3GALT5-AS1
- ECgene alternative splicing isoforms for
- B3GALT5-AS1
Expression for B3GALT5-AS1 Gene
mRNA Expression by UniProt/SwissProt for B3GALT5-AS1 Gene:
P59052-B3AS1_HUMAN
Tissue specificity:
Ubiquitous.
Primer Products
-
OriGene qPCR primer pairs for B3GALT5-AS1
- genomics-online: primer clones - Search results for available C21ORF88 gene related products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for B3GALT5-AS1 Gene
Orthologs for B3GALT5-AS1 Gene
This gene was present in the common ancestor of human and chimp.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | C21orf88 33 |
|
OneToOne |
- Species where no ortholog for B3GALT5-AS1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- cow (Bos Taurus)
- dog (Canis familiaris)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- mouse (Mus musculus)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for B3GALT5-AS1 Gene
No data available for Paralogs for B3GALT5-AS1 Gene
Variants for B3GALT5-AS1 Gene
| SNP ID | Clin | Chr 21 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000069272 | -- | 39,607,747(-) | G/A | intron_variant | |
| rs1000305088 | -- | 39,614,173(-) | G/A/T | upstream_transcript_variant | |
| rs1000863587 | -- | 39,602,305(-) | T/C | genic_downstream_transcript_variant, intron_variant | |
| rs1001071953 | -- | 39,609,095(-) | A/G | intron_variant | |
| rs1001128577 | -- | 39,608,427(-) | T/A | intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv27418 | CNV | gain | 19812545 |
| esv34779 | CNV | gain | 17911159 |
| esv3568195 | CNV | loss | 25503493 |
| esv3647020 | CNV | gain | 21293372 |
| nsv1061454 | CNV | gain | 25217958 |
| nsv478120 | CNV | novel sequence insertion | 20440878 |
| nsv587484 | CNV | loss | 21841781 |
Gene Damage Index Score:
1.47;
28.64% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for B3GALT5-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- B3GALT5-AS1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for B3GALT5-AS1 Gene
Disorders for B3GALT5-AS1 Gene
Additional Disease Information for B3GALT5-AS1
No disorders were found for B3GALT5-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for B3GALT5-AS1 Gene
Publications for B3GALT5-AS1 Gene
- Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A … Antonarakis SE (Genomics 2002) 2 3 4 56
- The pivotal role and mechanism of long non-coding RNA B3GALT5-AS1 in the diagnosis of acute pancreatitis. (PMID: 31177837) Wang L … Wang Y (Artificial cells, nanomedicine, and biotechnology 2019) 2 3 56
- Abnormally expressed long noncoding RNA B3GALT5-AS1 may serve as a biomarker for the diagnostic and prognostic of gastric cancer. (PMID: 31338903) Feng W … Ju S (Journal of cellular biochemistry 2019) 2 3 56
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 56
- Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. (PMID: 20494980) Warnatz HJ … Yaspo ML (Nucleic acids research 2010) 3 56
Products for B3GALT5-AS1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for B3GALT5-AS1
- Origene Custom Protein Services for B3GALT5-AS1
- Origene shrna and RNAi products in human, mouse, rat for B3GALT5-AS1
- Browse OriGene Inhibitory RNA Products For B3GALT5-AS1
- OriGene qPCR primer pairs for B3GALT5-AS1
- Browse CRISPR knockouts for B3GALT5-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For B3GALT5-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- antibodies-online: Show 15 available C21ORF88 Antibodies ranked by validation data
- antibodies-online: Search results for available C21ORF88 related products ranked by validation data
- antibodies-online: Search results for available C21ORF88 related products ranked by validation data
- genomics-online: cdna clones - Search results for available C21ORF88 gene related products
- orf clones - Search results for available C21ORF88 gene related products
- genomics-online: gRNA clones - Search results for available C21ORF88 gene related products
- genomics-online: primer clones - Search results for available C21ORF88 gene related products
- genomics-online: shRNA clones - Search results for available C21ORF88 gene related products
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for B3GALT5-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for B3GALT5-AS1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for B3GALT5-AS1
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for B3GALT5-AS1
Sources for B3GALT5-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource