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Aliases for AURKAPS1 Gene

Aliases for AURKAPS1 Gene

  • Aurora Kinase A Pseudogene 1 2 3 5
  • Serine/Threonine Kinase 6 Pseudogene 2 3
  • AurAps1 3
  • STK6P 3

External Ids for AURKAPS1 Gene

Previous HGNC Symbols for AURKAPS1 Gene

  • STK6P

Previous GeneCards Identifiers for AURKAPS1 Gene

  • GC00U909471
  • GC01M218507
  • GC01M220321
  • GC01M220439
  • GC01M191113

Summaries for AURKAPS1 Gene

GeneCards Summary for AURKAPS1 Gene

AURKAPS1 (Aurora Kinase A Pseudogene 1) is a Pseudogene.

Additional gene information for AURKAPS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AURKAPS1 Gene

Genomics for AURKAPS1 Gene

GeneHancer (GH) Regulatory Elements for AURKAPS1 Gene

Promoters and enhancers for AURKAPS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J220270 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.7 -4.3 -4275 2.6 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZBTB7B YY1 POLR2B RAB3GAP2 RPS15AP12 SNX2P1 ZC3H11B BPNT1 AURKAPS1
GH01J220253 Enhancer 0.3 FANTOM5 0.4 +14.0 14034 0.4 MORF4L1P1 AURKAPS1 RAB3GAP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AURKAPS1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the AURKAPS1 gene promoter:
  • LUN-1
  • Hlf
  • POU6F1 (c2)
  • Nkx6-1
  • FOXJ2 (long isoform)
  • FOXJ2
  • YY1
  • ZID
  • AP-1
  • c-Fos

Genomic Locations for AURKAPS1 Gene

Genomic Locations for AURKAPS1 Gene
chr1:220,266,179-220,267,917
(GRCh38/hg38)
Size:
1,739 bases
Orientation:
Minus strand
chr1:220,439,521-220,441,259
(GRCh37/hg19)
Size:
1,739 bases
Orientation:
Minus strand

Genomic View for AURKAPS1 Gene

Genes around AURKAPS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AURKAPS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AURKAPS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AURKAPS1 Gene

Function for AURKAPS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AURKAPS1 Gene

Localization for AURKAPS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AURKAPS1 Gene

Pathways & Interactions for AURKAPS1 Gene

SuperPathways for AURKAPS1 Gene

No Data Available

Interacting Proteins for AURKAPS1 Gene

Gene Ontology (GO) - Biological Process for AURKAPS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AURKAPS1 Gene

Drugs & Compounds for AURKAPS1 Gene

No Compound Related Data Available

Transcripts for AURKAPS1 Gene

mRNA/cDNA for AURKAPS1 Gene

(1) Additional mRNA sequences :
(272) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AURKAPS1 Gene

Aurora kinase A pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AURKAPS1 Gene

No ASD Table

Relevant External Links for AURKAPS1 Gene

GeneLoc Exon Structure for
AURKAPS1
ECgene alternative splicing isoforms for
AURKAPS1

Expression for AURKAPS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AURKAPS1 Gene

NURSA nuclear receptor signaling pathways regulating expression of AURKAPS1 Gene:

AURKAPS1

SOURCE GeneReport for Unigene cluster for AURKAPS1 Gene:

Hs.744357
genes like me logo Genes that share expression patterns with AURKAPS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AURKAPS1 Gene

Orthologs for AURKAPS1 Gene

Evolution for AURKAPS1 Gene

ENSEMBL:
Gene Tree for AURKAPS1 (if available)
TreeFam:
Gene Tree for AURKAPS1 (if available)

No data available for Orthologs for AURKAPS1 Gene

Paralogs for AURKAPS1 Gene

No data available for Paralogs for AURKAPS1 Gene

Variants for AURKAPS1 Gene

Sequence variations from dbSNP and Humsavar for AURKAPS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000609596 -- 220,268,703(-) T/C upstream_transcript_variant
rs1002966071 -- 220,266,609(-) A/T non_coding_transcript_variant
rs1003152038 -- 220,268,132(-) A/G upstream_transcript_variant
rs1003322993 -- 220,266,897(-) T/C non_coding_transcript_variant
rs1003433152 -- 220,266,053(-) G/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for AURKAPS1 Gene

Variant ID Type Subtype PubMed ID
esv2673210 CNV deletion 23128226
esv2723173 CNV deletion 23290073
esv3588897 CNV loss 21293372
nsv4643 CNV deletion 18451855
nsv826675 CNV loss 20364138
nsv826686 CNV loss 20364138
nsv945298 CNV duplication 23825009

Additional Variant Information for AURKAPS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AURKAPS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AURKAPS1 Gene

Disorders for AURKAPS1 Gene

Additional Disease Information for AURKAPS1

No disorders were found for AURKAPS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AURKAPS1 Gene

Publications for AURKAPS1 Gene

  1. Assignment of STK6 to human chromosome 20q13.2-->q13.3 and a pseudogene STK6P to 1q41-->q42. (PMID: 9605851) Kimura M … Okano Y (Cytogenetics and cell genetics 1997) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for AURKAPS1 Gene

Sources for AURKAPS1 Gene

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