AURKAP1 Gene (Pseudogene)

Aurora Kinase A Pseudogene 1

GC01M220267
GIFtS:
9
See more...

Aliases for AURKAP1 Gene

Aliases for AURKAP1 Gene

  • Aurora Kinase A Pseudogene 1 2 3 5
  • Serine/Threonine Kinase 6 Pseudogene 2 3
  • AurAps1 2 3
  • AURKAPS1 3
  • AURKAP1 5
  • STK6P 3

External Ids for AURKAP1 Gene

Previous HGNC Symbols for AURKAP1 Gene

  • STK6P
  • AURKAPS1

Summaries for AURKAP1 Gene

GeneCards Summary for AURKAP1 Gene

AURKAP1 (Aurora Kinase A Pseudogene 1) is a Pseudogene.

Additional gene information for AURKAP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AURKAP1 Gene

Genomics for AURKAP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for AURKAP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J220265 Enhancer 0.3 Ensembl 600.7 +1.8 1816 0.6 FOXA2 FOXA1 AURKAP1 RAB3GAP2 lnc-BPNT1-2 piR-32810-015 IARS2
GH01J220270 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.7 -3.7 -3719 3.7 RNF2 CREB1 TEAD4 PRDM10 ZNF629 TFE3 ZNF512 LEF1 IKZF1 ZNF692 RAB3GAP2 lnc-BPNT1-2 lnc-IARS2-5 RPS15AP12 SNX2P1 ZC3H11B BPNT1 AURKAP1 IARS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AURKAP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AURKAP1 Gene

Genomic Locations for AURKAP1 Gene
chr1:220,266,179-220,267,917
(GRCh38/hg38)
Size:
1,739 bases
Orientation:
Minus strand
chr1:220,439,521-220,441,259
(GRCh37/hg19)
Size:
1,739 bases
Orientation:
Minus strand

Genomic View for AURKAP1 Gene

Genes around AURKAP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AURKAP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AURKAP1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for AURKAP1 Gene

Proteins for AURKAP1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for AURKAP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AURKAP1 Gene

Domains & Families for AURKAP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AURKAP1 Gene

Function for AURKAP1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AURKAP1 Gene

Localization for AURKAP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AURKAP1 Gene

Pathways & Interactions for AURKAP1 Gene

PathCards logo

SuperPathways for AURKAP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AURKAP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AURKAP1 Gene

Drugs & Compounds for AURKAP1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for AURKAP1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for AURKAP1 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for AURKAP1 Gene

No ASD Table

Relevant External Links for AURKAP1 Gene

GeneLoc Exon Structure for
AURKAP1

Expression for AURKAP1 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for AURKAP1

SOURCE GeneReport for Unigene cluster for AURKAP1 Gene:

Hs.744357
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AURKAP1 Gene

Orthologs for AURKAP1 Gene

Evolution for AURKAP1 Gene

ENSEMBL:
Gene Tree for AURKAP1 (if available)
TreeFam:
Gene Tree for AURKAP1 (if available)

No data available for Orthologs for AURKAP1 Gene

Paralogs for AURKAP1 Gene

No data available for Paralogs for AURKAP1 Gene

Variants for AURKAP1 Gene

Structural Variations from Database of Genomic Variants (DGV) for AURKAP1 Gene

Variant ID Type Subtype PubMed ID
esv2673210 CNV deletion 23128226
esv2723173 CNV deletion 23290073
esv3588897 CNV loss 21293372
nsv4643 CNV deletion 18451855
nsv826675 CNV loss 20364138
nsv826686 CNV loss 20364138
nsv945298 CNV duplication 23825009

Additional Variant Information for AURKAP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AURKAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for AURKAP1 Gene

Disorders for AURKAP1 Gene

Additional Disease Information for AURKAP1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for AURKAP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AURKAP1 Gene

Publications for AURKAP1 Gene

  1. Long noncoding RNA AURKAPS1 potentiates malignant hepatocellular carcinoma progression by regulating miR-142, miR-155 and miR-182. (PMID: 31873123) Li J … Qiu X (Scientific reports 2019) 2 3
  2. Assignment of STK6 to human chromosome 20q13.2-->q13.3 and a pseudogene STK6P to 1q41-->q42. (PMID: 9605851) Kimura M … Okano Y (Cytogenetics and cell genetics 1997) 2 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for AURKAP1 gene in Mastermind

Products for AURKAP1 Gene

Sources for AURKAP1 Gene