Aliases for ATXN2-AS Gene

Subcategory (RNA class) for ATXN2-AS Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ATXN2-AS Gene

  • ATXN2 Antisense RNA 2 3 5
  • ATXN2-AS 2 5
  • NONHSAG012307.2 91
  • HSALNG0094044 164
  • Lnc-ACAD10-10 165

External Ids for ATXN2-AS Gene

Summaries for ATXN2-AS Gene

GeneCards Summary for ATXN2-AS Gene

ATXN2-AS (ATXN2 Antisense RNA) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ATXN2-AS Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ATXN2-AS Gene

Genomics for ATXN2-AS Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ATXN2-AS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J111596 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.3 -267 5.1 SP1 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 TFE3 LEF1 IKZF1 ZNF692 ATXN2 5MWI_A-035 ATXN2-AS lnc-BRAP-1 MAPKAPK5 HSPA8P14 PCNPP1 SH2B3 PHETA1 RPL6
GH12J111055 Enhancer 1.7 VISTA UCNEbase FANTOM5 ENCODE 11.7 -541.8 -541814 2.9 CREB1 ETV6 GABPA ZNF776 PKNOX1 ZNF600 KLF9 SP2 ELK1 CTBP1 ADAM1A ATXN2 IFT81 MAPKAPK5 PCNPP1 CUX2 BRAP ATXN2-AS ANAPC7 MYL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ATXN2-AS on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ATXN2-AS Gene

Genomic Locations for ATXN2-AS Gene
chr12:111,599,005-111,605,355
(GRCh38/hg38)
Size:
6,351 bases
Orientation:
Plus strand

Genomic View for ATXN2-AS Gene

Genes around ATXN2-AS on UCSC Golden Path with GeneCards custom track
ATXN2-AS in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ATXN2-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATXN2-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATXN2-AS Gene

Proteins for ATXN2-AS Gene

Post-translational modifications for ATXN2-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATXN2-AS Gene

Domains & Families for ATXN2-AS Gene

Gene Families for ATXN2-AS Gene

genes like me logo Genes that share domains with ATXN2-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ATXN2-AS Gene

Function for ATXN2-AS Gene

Phenotypes From GWAS Catalog for ATXN2-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATXN2-AS Gene

Localization for ATXN2-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATXN2-AS Gene

Pathways & Interactions for ATXN2-AS Gene

PathCards logo

SuperPathways for ATXN2-AS Gene

No Data Available

Gene Ontology (GO) - Biological Process for ATXN2-AS Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ATXN2-AS Gene

Drugs & Compounds for ATXN2-AS Gene

No Compound Related Data Available

Transcripts for ATXN2-AS Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ATXN2-AS Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004F3FEB_9606 lncRNA 485 2

Ensembl: ENST00000547021 (view in UCSC) ,

NONCODE: NONHSAT030748.2,

URS0000BC43ED_9606 lncRNA 484 2

HGNC: 51838,

RefSeq: NR_146497,

URS00009C3715_9606 lncRNA 282 2

LncBook: HSALNT0194938,

NONCODE: NONHSAT162761.1,

URS0000D5CDA3_9606 lncRNA 4455 1

LNCipedia: lnc-ACAD10-10:1,

ATXN2-AS in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ATXN2-AS Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ATXN2-AS Gene

No ASD Table

Relevant External Links for ATXN2-AS Gene

GeneLoc Exon Structure for
ATXN2-AS

Expression for ATXN2-AS Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATXN2-AS Gene

Orthologs for ATXN2-AS Gene

Evolution for ATXN2-AS Gene

ENSEMBL:
Gene Tree for ATXN2-AS (if available)
TreeFam:
Gene Tree for ATXN2-AS (if available)

No data available for Orthologs for ATXN2-AS Gene

Paralogs for ATXN2-AS Gene

No data available for Paralogs for ATXN2-AS Gene

Variants for ATXN2-AS Gene

Additional dbSNP identifiers (rs#s) for ATXN2-AS Gene

Additional Variant Information for ATXN2-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATXN2-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ATXN2-AS Gene

Disorders for ATXN2-AS Gene

Additional Disease Information for ATXN2-AS

No disorders were found for ATXN2-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATXN2-AS Gene

Publications for ATXN2-AS Gene

No publications were found for ATXN2-AS Gene.

Products for ATXN2-AS Gene

Sources for ATXN2-AS Gene