Aliases for ATP6V1C1 Gene
Aliases for ATP6V1C1 Gene
- ATPase H+ Transporting V1 Subunit C1 2 3 5
- ATPase, H+ Transporting, Lysosomal 42kDa, V1 Subunit C1 2 3
- Vacuolar Proton Pump Subunit C 1 3 4
- V-ATPase Subunit C 1 3 4
- ATP6C 3 4
- ATP6D 3 4
- VATC 3 4
- ATPase, H+ Transporting, Lysosomal 42kDa, V1 Subunit C, Isoform 1 2
- ATPase, H+ Transporting, Lysosomal (Vacuolar Proton Pump) 42kD 2
- H(+)-Transporting Two-Sector ATPase, Subunit C 3
- Subunit C Of Vacuolar Proton-ATPase V1 Domain 3
- Vacuolar Proton-ATPase, Subunit C, VI Domain 3
- H+-Transporting ATPase Chain C, Vacuolar 3
- Vacuolar Proton Pump, 42-KD Subunit 3
- V-Type Proton ATPase Subunit C 1 3
- Testicular Tissue Protein Li 223 3
- Vacuolar ATP Synthase Subunit C 3
- Vacuolar Proton Pump C Subunit 3
- H+ -ATPase C Subunit 3
- V-ATPase C Subunit 3
- Vma5 3
External Ids for ATP6V1C1 Gene
- HGNC: 856
- Entrez Gene: 528
- Ensembl: ENSG00000155097
- OMIM: 603097
- UniProtKB: P21283
Previous HGNC Symbols for ATP6V1C1 Gene
- ATP6D
- ATP6C
Previous GeneCards Identifiers for ATP6V1C1 Gene
- GC08P104101
- GC08P103702
- GC08P103989
- GC08P104102
- GC08P104033
- GC08P099233
Summaries for ATP6V1C1 Gene
-
This gene encodes a component of vacuolar ATPase (V-ATPase), a multisubunit enzyme that mediates acidification of intracellular compartments of eukaryotic cells. V-ATPase dependent acidification is necessary for such intracellular processes as protein sorting, zymogen activation, receptor-mediated endocytosis, and synaptic vesicle proton gradient generation. V-ATPase is composed of a cytosolic V1 domain and a transmembrane V0 domain. The V1 domain consists of three A and three B subunits, two G subunits plus the C, D, E, F, and H subunits. The V1 domain contains the ATP catalytic site. The V0 domain consists of five different subunits: a, c, c', c'', and d. Additional isoforms of many of the V1 and V0 subunit proteins are encoded by multiple genes or alternatively spliced transcript variants. This gene is one of two genes that encode the V1 domain C subunit proteins and is found ubiquitously. This C subunit is analogous but not homologous to gamma subunit of F-ATPases. Previously, this gene was designated ATP6D. [provided by RefSeq, Jul 2008]
GeneCards Summary for ATP6V1C1 Gene
ATP6V1C1 (ATPase H+ Transporting V1 Subunit C1) is a Protein Coding gene. Among its related pathways are Rheumatoid arthritis and Insulin receptor recycling. Gene Ontology (GO) annotations related to this gene include transporter activity and proton-transporting ATPase activity, rotational mechanism. An important paralog of this gene is ATP6V1C2.
UniProtKB/Swiss-Prot for ATP6V1C1 Gene
-
Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
-
H+-ATPase (also known as vacuolar ATPase, V-ATPase) is a enzyme transporter that functions to acidify intracellular compartments in eukaryotic cells. It is ubiquitously expressed and is present in endomembrane organelles such as vacuoles, lysosomes and endosomes.
Additional gene information for ATP6V1C1 Gene
No data available for CIViC summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP6V1C1 Gene
Genomics for ATP6V1C1 Gene
GeneHancer (GH) Regulatory Elements for ATP6V1C1 Gene
Promoters and enhancers for ATP6V1C1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around ATP6V1C1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for ATP6V1C1 Gene
Genomic Locations for ATP6V1C1 Gene
- chr8:103,021,020-103,073,057
- (GRCh38/hg38)
- Size:
- 52,038 bases
- Orientation:
- Plus strand
- chr8:104,033,248-104,085,285
- (GRCh37/hg19)
Genomic View for ATP6V1C1 Gene
Genes around ATP6V1C1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 8q22.3 by Entrez Gene
- 8q22.3 by HGNC
- 8q22.3 by Ensembl
ATP6V1C1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ATP6V1C1 Gene
Proteins for ATP6V1C1 Gene
-
Protein details for ATP6V1C1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P21283-VATC1_HUMAN
- Recommended name:
- V-type proton ATPase subunit C 1
- Protein Accession:
- P21283
Protein attributes for ATP6V1C1 Gene
- Size:
- 382 amino acids
- Molecular mass:
- 43942 Da
- Quaternary structure:
-
- V-ATPase is a heteromultimeric enzyme composed of a peripheral catalytic V1 complex (components A to H) attached to an integral membrane V0 proton pore complex (components: a, c, c, c and d).
Protein Expression for ATP6V1C1 Gene
Post-translational modifications for ATP6V1C1 Gene
Other Protein References for ATP6V1C1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for ATP6V1C1
- Novus Biologicals Antibodies for ATP6V1C1
- Invitrogen Antibodies for ATP6V1C1
- Search GeneTex for Antibodies for ATP6V1C1
-
Boster Bio Antibodies for ATP6V1C1
-
Santa Cruz Biotechnology (SCBT) Antibodies for ATP6V1C1
Protein Products
-
OriGene Purified Proteins for ATP6V1C1
- Search Origene for MassSpec and Protein Over-expression Lysates for ATP6V1C1
- Origene Custom Protein Services for ATP6V1C1
- Search GeneTex for Proteins for ATP6V1C1
Assay Products
No data available for DME Specific Peptides for ATP6V1C1 Gene
Domains & Families for ATP6V1C1 Gene
Gene Families for ATP6V1C1 Gene
- HGNC:
- IUPHAR :
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
- Transporters
Protein Domains for ATP6V1C1 Gene
- Blocks:
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for ATP6V1C1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P21283- Family:
-
- Belongs to the V-ATPase C subunit family.
Function for ATP6V1C1 Gene
Molecular function for ATP6V1C1 Gene
- UniProtKB/Swiss-Prot Function:
- Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Phenotypes From GWAS Catalog for ATP6V1C1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005215 | transporter activity | NAS | 8250920 |
| GO:0005515 | protein binding | IPI | 16415858 |
| GO:0008553 | proton-exporting ATPase activity, phosphorylative mechanism | IBA | -- |
| GO:0015078 | proton transmembrane transporter activity | IEA | -- |
| GO:0046961 | proton-transporting ATPase activity, rotational mechanism | TAS | 8250920 |
Phenotypes for ATP6V1C1 Gene
- MGI mutant phenotypes for ATP6V1C1:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for ATP6V1C1:
Animal Models for ATP6V1C1 Gene
- MGI Knock Outs for ATP6V1C1:
-
- Atp6v1c1 Atp6v1c1<tm1b(NCOM)Mfgc>
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for ATP6V1C1
-
CRISPR Products
-
OriGene CRISPR knockouts for ATP6V1C1
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for ATP6V1C1
- genomics-online: gRNA clones - Search results for available ATP6V1C1 gene related products
- Applied Biological Materials CRISPR for ATP6V1C1
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for ATP6V1C1
- GenScript: Design CRISPR guide RNA sequences for ATP6V1C1
miRNA for ATP6V1C1 Gene
- miRTarBase miRNAs that target ATP6V1C1
-
- hsa-mir-155-5p (MIRT001565)
- hsa-mir-374b-5p (MIRT016047)
- hsa-mir-130b-3p (MIRT020236)
- hsa-mir-128-3p (MIRT021977)
- hsa-mir-1-3p (MIRT023601)
- hsa-mir-30a-5p (MIRT028462)
- hsa-mir-19b-3p (MIRT031155)
- hsa-mir-30c-5p (MIRT047877)
- hsa-mir-8063 (MIRT223595)
- hsa-mir-16-2-3p (MIRT223632)
- hsa-mir-130a-3p (MIRT223634)
- hsa-mir-195-3p (MIRT223635)
- hsa-mir-301a-3p (MIRT223636)
- hsa-mir-519c-3p (MIRT223637)
- hsa-mir-519b-3p (MIRT223638)
- hsa-mir-519a-3p (MIRT223639)
- hsa-mir-454-3p (MIRT223641)
- hsa-mir-301b-3p (MIRT223642)
- hsa-mir-1262 (MIRT223643)
- hsa-mir-4295 (MIRT223644)
- hsa-mir-3666 (MIRT223645)
- hsa-mir-4506 (MIRT223646)
- hsa-mir-4701-3p (MIRT223647)
- hsa-mir-6736-5p (MIRT223648)
- hsa-mir-6502-3p (MIRT539056)
- hsa-mir-6512-5p (MIRT539057)
- hsa-mir-520e (MIRT539058)
- hsa-mir-520d-3p (MIRT539059)
- hsa-mir-520c-3p (MIRT539060)
- hsa-mir-520b (MIRT539061)
- hsa-mir-520a-3p (MIRT539062)
- hsa-mir-373-3p (MIRT539063)
- hsa-mir-372-3p (MIRT539064)
- hsa-mir-302e (MIRT539065)
- hsa-mir-302d-3p (MIRT539066)
- hsa-mir-302c-3p (MIRT539067)
- hsa-mir-302b-3p (MIRT539068)
- hsa-mir-302a-3p (MIRT539069)
- hsa-mir-7161-5p (MIRT539070)
- hsa-mir-548u (MIRT539071)
- hsa-mir-5187-3p (MIRT713170)
- hsa-mir-4715-3p (MIRT713171)
- hsa-mir-3064-3p (MIRT713172)
- hsa-mir-6881-3p (MIRT713173)
- hsa-mir-877-3p (MIRT713174)
- hsa-mir-4317 (MIRT713175)
- hsa-mir-4668-3p (MIRT713176)
- hsa-mir-548e-5p (MIRT713177)
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for ATP6V1C1
- Browse OriGene Inhibitory RNA Products For ATP6V1C1
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ATP6V1C1
- genomics-online: shRNA clones - Search results for available ATP6V1C1 gene related products
Clone Products
-
OriGene ORF clones in human for ATP6V1C1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for ATP6V1C1
- VectorBuilder custom plasmid, inducible vectors for ATP6V1C1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ATP6V1C1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for ATP6V1C1
- genomics-online: cdna clones - Search results for available ATP6V1C1 gene related products
- orf clones - Search results for available ATP6V1C1 gene related products
- Applied Biological Materials Clones for ATP6V1C1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
Horizon Cell Lines for ATP6V1C1
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ATP6V1C1 Gene
Localization for ATP6V1C1 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 5 |
| cytosol | 5 |
| lysosome | 5 |
| plasma membrane | 4 |
| nucleus | 3 |
| peroxisome | 2 |
- Cytosol (3)
- Nucleoplasm (3)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000221 | vacuolar proton-transporting V-type ATPase, V1 domain | IBA | -- |
| GO:0005737 | cytoplasm | IEA | -- |
| GO:0005765 | lysosomal membrane | HDA,IBA | -- |
| GO:0005829 | cytosol | TAS | -- |
| GO:0005886 | plasma membrane | ISS | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot for ATP6V1C1 Gene
Pathways & Interactions for ATP6V1C1 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Insulin receptor recycling | ||
| 2 | Innate Immune System |
.61
|
|
| 3 | Metabolism | ||
| 4 | mTOR signaling pathway (KEGG) | ||
| 5 | Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. | ||
Pathways by source for ATP6V1C1 Gene
10 Reactome pathways for ATP6V1C1 Gene
Interacting Proteins for ATP6V1C1 Gene
Selected Interacting proteins:
P21283-VATC1_HUMAN
ENSP00000379203
for ATP6V1C1 Gene via
IID
STRING
UniProtKB
GPS-Prot Interaction Network for ATP6V1C1
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006811 | ion transport | IEA | -- |
| GO:0008286 | insulin receptor signaling pathway | TAS | -- |
| GO:0015991 | ATP hydrolysis coupled proton transport | IEA | -- |
| GO:0016241 | regulation of macroautophagy | NAS | 22982048 |
| GO:0033572 | transferrin transport | TAS | -- |
No data available for SIGNOR curated interactions for ATP6V1C1 Gene
Drugs & Compounds for ATP6V1C1 Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| Thonzonium | Approved | Pharma | Target, inhibitor | 0 | ||
| Water | Approved | Pharma | 0 | |||
| D-tartaric acid | Experimental | Pharma | Target | 0 | ||
| Bafilomycin A1 | Experimental | Pharma | V-ATPase inhibitor,selective and reversible, H+-ATPase (vacuolar) inhibitor | 0 | ||
| ATP | Investigational | Nutra | Agonist, Activator, Full agonist, Antagonist, Potentiation, Pore Blocker | 0 |
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs | |
|---|---|---|---|---|---|---|
| ADP |
|
Full agonist, Agonist, Partial agonist, Antagonist, Gating inhibitor | 58-64-0 |
|
||
| Phosphate |
|
14265-44-2 |
|
(2) Tocris Compounds for ATP6V1C1 Gene
| Compound | Action | Cas Number |
|---|---|---|
| Bafilomycin A1 | H+-ATPase (vacuolar) inhibitor | 88899-55-2 |
| Concanamycin A | H+-ATPase (vacuolar) inhibitor | 80890-47-7 |
Transcripts for ATP6V1C1 Gene
mRNA/cDNA for ATP6V1C1 Gene
- (277) Selected AceView cDNA sequences:
- (8) Additional mRNA sequences :
- (2) REFSEQ mRNAs :
- (6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000395862 5612 bps (uc003yla.4)
- ENST00000518738 2130 bps (uc003ykz.5)
- ENST00000518857 1501 bps (uc011lhl.3)
- ENST00000518959 553 bps (uc064phr.1)
- ENST00000521514 1484 bps (uc010mbz.4)
Unigene Clusters for ATP6V1C1 Gene
CRISPR Products
-
OriGene CRISPR knockouts for ATP6V1C1
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for ATP6V1C1
- genomics-online: gRNA clones - Search results for available ATP6V1C1 gene related products
- Applied Biological Materials CRISPR for ATP6V1C1
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for ATP6V1C1
- GenScript: Design CRISPR guide RNA sequences for ATP6V1C1
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for ATP6V1C1
- Browse OriGene Inhibitory RNA Products For ATP6V1C1
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ATP6V1C1
- genomics-online: shRNA clones - Search results for available ATP6V1C1 gene related products
Clone Products
-
OriGene ORF clones in human for ATP6V1C1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for ATP6V1C1
- VectorBuilder custom plasmid, inducible vectors for ATP6V1C1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ATP6V1C1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for ATP6V1C1
- genomics-online: cdna clones - Search results for available ATP6V1C1 gene related products
- orf clones - Search results for available ATP6V1C1 gene related products
- Applied Biological Materials Clones for ATP6V1C1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | |||||||||||||||||||||||||||||
| SP2: | - | ||||||||||||||||||||||||||||||
| SP3: |
Expression for ATP6V1C1 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Brain (Nervous System)
-
Inner Cell Mass (Early Embryonic Tissues)
- Inner Cell Mass Cells Inner Cell Mass
- Thyroid (Endocrine System)
- Neural Tube (Nervous System)
- Intestine (Gastrointestinal Tract)
This gene is overexpressed in Frontal cortex (16.4), Brain (12.7), and Retina (6.8).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for ATP6V1C1 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of ATP6V1C1 Gene:
ATP6V1C1SOURCE GeneReport for Unigene cluster for ATP6V1C1 Gene:
Hs.86905mRNA Expression by UniProt/SwissProt for ATP6V1C1 Gene:
P21283-VATC1_HUMAN
Tissue specificity:
Ubiquitous.
Evidence on tissue expression from TISSUES for ATP6V1C1 Gene
- Nervous system(4.9)
- Liver(4.3)
- Bone marrow(4.2)
Primer Products
-
OriGene qPCR primer pairs and template standards for ATP6V1C1
-
OriGene qPCR primer pairs for ATP6V1C1
- genomics-online: primer clones - Search results for available ATP6V1C1 gene related products
Gene Expression Assay Products
No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP6V1C1 Gene
Orthologs for ATP6V1C1 Gene
This gene was present in the common ancestor of eukaryotes.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | ATP6V1C1 34 33 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | ATP6V1C1 34 33 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | ATP6V1C1 34 33 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | ATP6V1C1 34 |
|
OneToOne | |
| rat (Rattus norvegicus) |
Mammalia | Atp6v1c1 33 |
|
||
| mouse (Mus musculus) |
Mammalia | Atp6v1c1 16 34 33 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | -- 34 |
|
OneToMany | |
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| chicken (Gallus gallus) |
Aves | ATP6V1C1 34 33 |
|
OneToOne | |
| lizard (Anolis carolinensis) |
Reptilia | ATP6V1C1 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | atp6v1c1 33 |
|
||
| MGC75601 33 |
|
||||
| zebrafish (Danio rerio) |
Actinopterygii | atp6v1c1b 34 |
|
OneToMany | |
| atp6v1c1a 34 33 |
|
OneToMany | |||
| atp6v1c1 33 |
|
||||
| rainbow trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.2415 33 |
|
||
| African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP005845 33 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | Vha44 34 35 33 |
|
OneToMany | |
| worm (Caenorhabditis elegans) |
Secernentea | vha-11 34 |
|
OneToMany | |
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | VMA5 34 33 |
|
OneToMany | |
| K. lactis yeast (Kluyveromyces lactis) |
Saccharomycetes | KLLA0F26114g 33 |
|
||
| thale cress (Arabidopsis thaliana) |
eudicotyledons | DET3 33 |
|
||
| rice (Oryza sativa) |
Liliopsida | Os05g0593100 33 |
|
||
| sea squirt (Ciona savignyi) |
Ascidiacea | CSA.3174 34 |
|
OneToMany | |
| bread mold (Neurospora crassa) |
Ascomycetes | NCU09897 33 |
|
||
| fission yeast (Schizosaccharomyces pombe) |
Schizosaccharomycetes | vma5 33 |
|
- Species where no ortholog for ATP6V1C1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Evolution for ATP6V1C1 Gene
- ENSEMBL:
- Gene Tree for ATP6V1C1 (if available)
- TreeFam:
- Gene Tree for ATP6V1C1 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for ATP6V1C1: view image
Paralogs for ATP6V1C1 Gene
Variants for ATP6V1C1 Gene
| SNP ID | Clin | Chr 08 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000010313 | -- | 103,044,858(+) | C/G/T | intron_variant | |
| rs1000097426 | -- | 103,043,731(+) | CC/C | intron_variant | |
| rs1000119698 | -- | 103,019,776(+) | T/C | upstream_transcript_variant | |
| rs1000120186 | -- | 103,051,909(+) | A/G | intron_variant | |
| rs1000160213 | -- | 103,059,897(+) | CCC/C | intron_variant |
Residual Variation Intolerance Score:
25.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.23;
5.25% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for ATP6V1C1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ATP6V1C1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ATP6V1C1 Gene
Disorders for ATP6V1C1 Gene
Additional Disease Information for ATP6V1C1
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No disorders were found for ATP6V1C1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP6V1C1 Gene
Publications for ATP6V1C1 Gene
- Cloning and tissue distribution of subunits C, D, and E of the human vacuolar H(+)-ATPase. (PMID: 8250920) van Hille B … Bilbe G (Biochemical and biophysical research communications 1993) 2 3 4 58
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58
- MicroRNA-related genetic variations as predictors for risk of second primary tumor and/or recurrence in patients with early-stage head and neck cancer. (PMID: 20819778) Zhang X … Wu X (Carcinogenesis 2010) 3 44 58
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
- Revised nomenclature for mammalian vacuolar-type H+ -ATPase subunit genes. (PMID: 14580332) Smith AN … Karet FE (Molecular cell 2003) 2 3 58
Products for ATP6V1C1 Gene
- Browse R&D Systems for Antibodies
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- Custom Antibody ServicesOriGene Antibodies for ATP6V1C1
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- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
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- Sino Biological Human cDNA Clone for ATP6V1C1
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- Novus Biologicals Antibodies for ATP6V1C1
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- VectorBuilder custom plasmid, inducible vectors for ATP6V1C1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ATP6V1C1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for 30 available ATP6V1C1 Antibodies ranked by validation data
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- antibodies-online: Search results for 8 available ATP6V1C1 Proteins ranked by validation data
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- Search GeneTex for Antibodies for ATP6V1C1
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- Santa Cruz Biotechnology (SCBT) Antibodies for ATP6V1C1
- Search Santa Cruz Biotechnology (SCBT) for ATP6V1C1 siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for ATP6V1C1
- Horizon Cell Lines for ATP6V1C1
- genomics-online: cdna clones - Search results for available ATP6V1C1 gene related products
- orf clones - Search results for available ATP6V1C1 gene related products
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- genomics-online: primer clones - Search results for available ATP6V1C1 gene related products
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- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for ATP6V1C1
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- GeneCopoeia miRNA 3'UTR Target clone products for ATP6V1C1
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- Boster Bio Antibodies for ATP6V1C1
- Browse Boster Bio ELISA Kits
Sources for ATP6V1C1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
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- (119) Disease Ontology
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- (123) CDC
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- (125) NCBI Bookshelf
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- (128) ViGene Biosciences
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- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
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- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
- (159) GlyConnect
- (160) Aminode
- (161) GeneCopoeia
- (162) GPS-Prot
- (163) RNACentral
- (164) LncRNADisease
- (165) LOVD
- (166) miR2Disease
- (167) DiseaseEnhancer
- (168) Boster Bio