Aliases for ATP6V1B1-AS1 Gene

Subcategory (RNA class) for ATP6V1B1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ATP6V1B1-AS1 Gene

  • ATP6V1B1 Antisense RNA 1 2 3 5
  • ATP6V1B1-AS1 2 170
  • HSALNG0015847 169

External Ids for ATP6V1B1-AS1 Gene

Summaries for ATP6V1B1-AS1 Gene

GeneCards Summary for ATP6V1B1-AS1 Gene

ATP6V1B1-AS1 (ATP6V1B1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ATP6V1B1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ATP6V1B1-AS1 Gene

Genomics for ATP6V1B1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ATP6V1B1-AS1 Gene

Promoters and enhancers for ATP6V1B1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J070993 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 +0.2 195 3.1 ZNF24 SP1 ZBTB40 CTCF RBPJ POLR2A NR2F1 HCFC1 ELF3 ZFX TEX261 ATP6V1B1-AS1 ENSG00000228384 ENSG00000258881 ZNF638 MPHOSPH10 CLEC4F ANKRD53 ADD2
GH02J070921 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 12.2 +72.3 72281 2.5 ZBTB40 CTCF ZSCAN21 ZIC2 PRDM10 ZNF629 ATF7 NR2C1 CREB1 POLR2A ATP6V1B1-AS1 VAX2 ADD2 ATP6V1B1 lnc-ATP6V1B1-2
GH02J070919 Enhancer 1 Ensembl ENCODE 12.2 +74.7 74690 0.7 FOXK2 CTCF FOXA1 RBPJ MIXL1 RAD21 MNT TEAD4 ELF3 AHR ATP6V1B1-AS1 ADD2 CD207 lnc-ATP6V1B1-2 VAX2
GH02J070850 Enhancer 0.9 FANTOM5 Ensembl ENCODE 11.1 +141.9 141948 4.8 ETV6 IKZF1 IKZF2 RUNX3 BCLAF1 NBN BATF IRF4 EBF1 ATF2 CD207 ATP6V1B1 VAX2 ATP6V1B1-AS1 ADD2 CLEC4F FIGLA lnc-CD207-1 piR-55194-195
GH02J070784 Enhancer 0.8 Ensembl 10.8 +209.5 209548 1.2 CTCF MYC L3MBTL2 RAD21 MAX DACH1 TEAD4 CBFA2T2 GMEB1 DPF2 ADD2 ATP6V1B1-AS1 VAX2 FIGLA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ATP6V1B1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATP6V1B1-AS1 Gene

Genomic Locations for ATP6V1B1-AS1 Gene
chr2:70,941,817-70,994,749
(GRCh38/hg38)
Size:
52,933 bases
Orientation:
Minus strand
chr2:71,168,947-71,175,740
(GRCh37/hg19)
Size:
6,794 bases
Orientation:
Minus strand

Genomic View for ATP6V1B1-AS1 Gene

Genes around ATP6V1B1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP6V1B1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP6V1B1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP6V1B1-AS1 Gene

Proteins for ATP6V1B1-AS1 Gene

Post-translational modifications for ATP6V1B1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP6V1B1-AS1 Gene

Domains & Families for ATP6V1B1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ATP6V1B1-AS1 Gene

Function for ATP6V1B1-AS1 Gene

Phenotypes From GWAS Catalog for ATP6V1B1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP6V1B1-AS1 Gene

Localization for ATP6V1B1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP6V1B1-AS1 Gene

Pathways & Interactions for ATP6V1B1-AS1 Gene

PathCards logo

SuperPathways for ATP6V1B1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ATP6V1B1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP6V1B1-AS1 Gene

Drugs & Compounds for ATP6V1B1-AS1 Gene

No Compound Related Data Available

Transcripts for ATP6V1B1-AS1 Gene

mRNA/cDNA for ATP6V1B1-AS1 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(2) LncBook transcripts :
(5) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP6V1B1-AS1 Gene

No ASD Table

Relevant External Links for ATP6V1B1-AS1 Gene

GeneLoc Exon Structure for
ATP6V1B1-AS1
ECgene alternative splicing isoforms for
ATP6V1B1-AS1

Expression for ATP6V1B1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATP6V1B1-AS1 Gene

genes like me logo Genes that share expression patterns with ATP6V1B1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP6V1B1-AS1 Gene

Orthologs for ATP6V1B1-AS1 Gene

Evolution for ATP6V1B1-AS1 Gene

ENSEMBL:
Gene Tree for ATP6V1B1-AS1 (if available)
TreeFam:
Gene Tree for ATP6V1B1-AS1 (if available)

No data available for Orthologs for ATP6V1B1-AS1 Gene

Paralogs for ATP6V1B1-AS1 Gene

No data available for Paralogs for ATP6V1B1-AS1 Gene

Variants for ATP6V1B1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP6V1B1-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs144845223 benign-likely-benign, likely-benign, benign, not specified, Renal tubular acidosis with progressive nerve deafness, not provided 70,943,683(-) C/A/T intron_variant
rs2266918 benign, not specified, Renal tubular acidosis with progressive nerve deafness 70,943,677(-) C/T intron_variant
rs782666539 uncertain-significance, Renal tubular acidosis with progressive nerve deafness 70,943,648(-) C/T intron_variant
rs1000171223 -- 70,945,436(-) A/C intron_variant
rs1000559497 -- 70,943,805(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ATP6V1B1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1004459 CNV loss 25217958
nsv1013232 CNV gain 25217958
nsv1014516 CNV gain 25217958
nsv1146915 OTHER inversion 26484159

Additional Variant Information for ATP6V1B1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP6V1B1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP6V1B1-AS1 Gene

Disorders for ATP6V1B1-AS1 Gene

Additional Disease Information for ATP6V1B1-AS1

No disorders were found for ATP6V1B1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP6V1B1-AS1 Gene

Publications for ATP6V1B1-AS1 Gene

No publications were found for ATP6V1B1-AS1 Gene.

No data available for External Links for ATP6V1B1-AS1 Gene

Products for ATP6V1B1-AS1 Gene

Sources for ATP6V1B1-AS1 Gene