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Aliases for ATP6V1B1-AS1 Gene

Subcategory (RNA class) for ATP6V1B1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ATP6V1B1-AS1 Gene

  • ATP6V1B1 Antisense RNA 1 2 3 5

External Ids for ATP6V1B1-AS1 Gene

Summaries for ATP6V1B1-AS1 Gene

GeneCards Summary for ATP6V1B1-AS1 Gene

ATP6V1B1-AS1 (ATP6V1B1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ATP6V1B1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP6V1B1-AS1 Gene

Genomics for ATP6V1B1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ATP6V1B1-AS1 Gene

Promoters and enhancers for ATP6V1B1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J070947 Enhancer 1.1 Ensembl ENCODE 650.7 +0.2 191 1.5 HDAC1 ATF1 RB1 ARID4B SIN3A KLF14 ZNF2 IRF4 RAD21 ZEB1 ATP6V1B1-AS1 TIA1 PCBP1-AS1 CLEC4F ATP6V1B1 VAX2 ENSG00000258881
GH02J070946 Enhancer 0.7 ENCODE 650.7 +1.6 1565 0.2 ELF3 CTCF IRF2 ARID4B ERF ZNF2 RAD21 ZNF335 RFXANK SCRT2 ATP6V1B1-AS1 ATP6V1B1 VAX2 ENSG00000258881
GH02J070976 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.3 -29.3 -29315 3.8 PKNOX1 ATF1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 FOS ANKRD53 ZNF638 TEX261 ATP6V1B1-AS1 VAX2 NAGK OR7E62P CLEC4F LOC105374795 ENSG00000258881
GH02J070919 Enhancer 0.9 ENCODE 12.3 +28.6 28585 0.2 FOXA2 ARID4B SIN3A ZNF48 ZNF143 MXD4 REST PPARG KAT8 NFIL3 ATP6V1B1-AS1 ADD2 CD207 ATP6V1B1 VAX2
GH02J070303 Enhancer 1 Ensembl ENCODE 10.6 +644.6 644611 0.8 ARID4B RAD21 RFX5 ZNF335 EGR1 ZNF143 CREM MIXL1 EGR2 ZNF654 FAM136A ATP6V1B1-AS1 VAX2 BRD7P6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ATP6V1B1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATP6V1B1-AS1 Gene

Genomic Locations for ATP6V1B1-AS1 Gene
chr2:70,941,817-70,948,611
(GRCh38/hg38)
Size:
6,795 bases
Orientation:
Minus strand
chr2:71,168,947-71,175,740
(GRCh37/hg19)

Genomic View for ATP6V1B1-AS1 Gene

Genes around ATP6V1B1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP6V1B1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP6V1B1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP6V1B1-AS1 Gene

Proteins for ATP6V1B1-AS1 Gene

Post-translational modifications for ATP6V1B1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP6V1B1-AS1 Gene

Domains & Families for ATP6V1B1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP6V1B1-AS1 Gene

Function for ATP6V1B1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP6V1B1-AS1 Gene

Localization for ATP6V1B1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP6V1B1-AS1 Gene

Pathways & Interactions for ATP6V1B1-AS1 Gene

SuperPathways for ATP6V1B1-AS1 Gene

No Data Available

Interacting Proteins for ATP6V1B1-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP6V1B1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP6V1B1-AS1 Gene

Drugs & Compounds for ATP6V1B1-AS1 Gene

No Compound Related Data Available

Transcripts for ATP6V1B1-AS1 Gene

mRNA/cDNA for ATP6V1B1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ATP6V1B1-AS1 Gene

No ASD Table

Relevant External Links for ATP6V1B1-AS1 Gene

GeneLoc Exon Structure for
ATP6V1B1-AS1
ECgene alternative splicing isoforms for
ATP6V1B1-AS1

Expression for ATP6V1B1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATP6V1B1-AS1 Gene

genes like me logo Genes that share expression patterns with ATP6V1B1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP6V1B1-AS1 Gene

Orthologs for ATP6V1B1-AS1 Gene

Evolution for ATP6V1B1-AS1 Gene

ENSEMBL:
Gene Tree for ATP6V1B1-AS1 (if available)
TreeFam:
Gene Tree for ATP6V1B1-AS1 (if available)

No data available for Orthologs for ATP6V1B1-AS1 Gene

Paralogs for ATP6V1B1-AS1 Gene

No data available for Paralogs for ATP6V1B1-AS1 Gene

Variants for ATP6V1B1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP6V1B1-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs2266918 benign, not specified, Renal tubular acidosis with progressive nerve deafness 70,943,677(-) C/T intron_variant
rs782666539 uncertain-significance, Renal tubular acidosis with progressive nerve deafness 70,943,648(-) C/T intron_variant
rs144845223 benign, not specified 70,943,683(-) C/A/T intron_variant
rs1000171223 -- 70,945,436(-) A/C intron_variant
rs1000559497 -- 70,943,805(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ATP6V1B1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1004459 CNV loss 25217958
nsv1013232 CNV gain 25217958
nsv1014516 CNV gain 25217958
nsv1146915 OTHER inversion 26484159

Additional Variant Information for ATP6V1B1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP6V1B1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP6V1B1-AS1 Gene

Disorders for ATP6V1B1-AS1 Gene

Additional Disease Information for ATP6V1B1-AS1

No disorders were found for ATP6V1B1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP6V1B1-AS1 Gene

Publications for ATP6V1B1-AS1 Gene

No publications were found for ATP6V1B1-AS1 Gene.

Products for ATP6V1B1-AS1 Gene

Sources for ATP6V1B1-AS1 Gene

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