Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ATP6V0E2-AS1 Gene

Subcategory (RNA class) for ATP6V0E2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ATP6V0E2-AS1 Gene

  • ATP6V0E2 Antisense RNA 1 2 3 5
  • ATP6V0E2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ATP6V0E2-AS1 Gene

Previous GeneCards Identifiers for ATP6V0E2-AS1 Gene

  • GC07M149566

Summaries for ATP6V0E2-AS1 Gene

GeneCards Summary for ATP6V0E2-AS1 Gene

ATP6V0E2-AS1 (ATP6V0E2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ATP6V0E2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP6V0E2-AS1 Gene

Genomics for ATP6V0E2-AS1 Gene

GeneHancer (GH) Regulatory Elements for ATP6V0E2-AS1 Gene

Promoters and enhancers for ATP6V0E2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I150364 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 26.2 -487.9 -487863 7 MLX ZFP64 DMAP1 YY1 ZNF213 E2F8 ZNF143 NFYC ZC3H11A MEF2D REPIN1 ENSG00000284041 ZNF767P ENSG00000244151 NUB1 ZNF777 ATP6V0E2-AS1 ZNF862 ENSG00000273419 ASIC3
GH07I149863 Enhancer 1.1 Ensembl ENCODE dbSUPER 23.7 +12.7 12712 8.1 MEIS2 CTCF PKNOX1 ZNF133 EBF1 BATF ZIC2 ZNF335 PRDM10 IKZF2 ATP6V0E2 ATP6V0E2-AS1 ZNF862 SSPO ENSG00000273011 PIR59309
GH07I149883 Enhancer 1.1 Ensembl ENCODE 23.4 -4.1 -4084 3.4 FOXA2 RB1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 RAD21 ETS1 YY1 ATP6V0E2 ATP6V0E2-AS1 SSPO ZNF862 ENSG00000273011 PIR51338
GH07I149238 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.6 +640.6 640601 2.1 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF212 ZNF783 ZNF398 LOC155060 ZNF777 ENSG00000271664 ZNF786 ATP6V0E2-AS1 ENSG00000273419 ZNF746
GH07I148986 Promoter/Enhancer 1.6 Ensembl ENCODE 11.6 +893.5 893470 2.6 PKNOX1 SMAD1 ARNT ARID4B SIN3A ZNF2 ZNF766 ZNF213 E2F8 ZNF143 GC07M148988 GHET1 RNY1 LOC155060 ZNF783 ZNF777 ZNF767P ZNF398 PDIA4 ENSG00000271664
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ATP6V0E2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATP6V0E2-AS1 Gene

Genomic Locations for ATP6V0E2-AS1 Gene
12,917 bases
Minus strand

Genomic View for ATP6V0E2-AS1 Gene

Genes around ATP6V0E2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP6V0E2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP6V0E2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP6V0E2-AS1 Gene

Proteins for ATP6V0E2-AS1 Gene

Post-translational modifications for ATP6V0E2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP6V0E2-AS1 Gene

Domains & Families for ATP6V0E2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP6V0E2-AS1 Gene

Function for ATP6V0E2-AS1 Gene

Phenotypes From GWAS Catalog for ATP6V0E2-AS1 Gene

Phenotypes for ATP6V0E2-AS1 Gene

GenomeRNAi human phenotypes for ATP6V0E2-AS1:
genes like me logo Genes that share phenotypes with ATP6V0E2-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP6V0E2-AS1 Gene

Localization for ATP6V0E2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP6V0E2-AS1 Gene

Pathways & Interactions for ATP6V0E2-AS1 Gene

SuperPathways for ATP6V0E2-AS1 Gene

No Data Available

Interacting Proteins for ATP6V0E2-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP6V0E2-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ATP6V0E2-AS1 Gene

Drugs & Compounds for ATP6V0E2-AS1 Gene

No Compound Related Data Available

Transcripts for ATP6V0E2-AS1 Gene

mRNA/cDNA for ATP6V0E2-AS1 Gene

Unigene Clusters for ATP6V0E2-AS1 Gene

ATP6V0E2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ATP6V0E2-AS1 Gene

No ASD Table

Relevant External Links for ATP6V0E2-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ATP6V0E2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATP6V0E2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ATP6V0E2-AS1 Gene

This gene is overexpressed in Brain - Hippocampus (x4.2).

SOURCE GeneReport for Unigene cluster for ATP6V0E2-AS1 Gene:

genes like me logo Genes that share expression patterns with ATP6V0E2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP6V0E2-AS1 Gene

Orthologs for ATP6V0E2-AS1 Gene

Evolution for ATP6V0E2-AS1 Gene

Gene Tree for ATP6V0E2-AS1 (if available)
Gene Tree for ATP6V0E2-AS1 (if available)

No data available for Orthologs for ATP6V0E2-AS1 Gene

Paralogs for ATP6V0E2-AS1 Gene

No data available for Paralogs for ATP6V0E2-AS1 Gene

Variants for ATP6V0E2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP6V0E2-AS1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000059882 -- 149,868,459(-) G/T non_coding_transcript_variant
rs1000094367 -- 149,873,555(-) C/T non_coding_transcript_variant
rs1000155146 -- 149,874,503(-) A/C upstream_transcript_variant
rs1001058079 -- 149,870,456(-) C/T intron_variant
rs1001945750 -- 149,874,473(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ATP6V0E2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv11717n54 CNV gain 21841781
dgv6751n100 CNV gain 25217958
dgv6752n100 CNV gain 25217958
dgv845n27 CNV gain 19166990
esv2759571 CNV gain 17122850
esv3576480 CNV gain 25503493
esv3615438 CNV gain 21293372
esv3615439 CNV gain 21293372
esv3891234 CNV gain 25118596
nsv1029484 CNV gain 25217958
nsv1033095 CNV gain 25217958
nsv1161666 CNV duplication 26073780
nsv471647 CNV gain 15918152
nsv519323 CNV loss 19592680
nsv521861 CNV loss 19592680
nsv8229 CNV gain+loss 18304495
nsv831184 CNV gain 17160897
nsv831185 CNV gain 17160897

Additional Variant Information for ATP6V0E2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP6V0E2-AS1 Gene

Disorders for ATP6V0E2-AS1 Gene

Additional Disease Information for ATP6V0E2-AS1

No disorders were found for ATP6V0E2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP6V0E2-AS1 Gene

Publications for ATP6V0E2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ATP6V0E2-AS1 Gene

Sources for ATP6V0E2-AS1 Gene

Loading form....