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Aliases for ATP6V0E1 Gene

Aliases for ATP6V0E1 Gene

  • ATPase H+ Transporting V0 Subunit E1 2 3 5
  • ATPase, H+ Transporting, Lysosomal 9kDa, V0 Subunit E1 2 3
  • V-ATPase 9.2 KDa Membrane Accessory Protein 3 4
  • Vacuolar Proton Pump Subunit E 1 3 4
  • V-ATPase M9.2 Subunit 3 4
  • V-ATPase Subunit E 1 3 4
  • ATP6V0E 3 4
  • ATP6H 3 4
  • ATPase, H+ Transporting, Lysosomal (Vacuolar Proton Pump) 9kD 2
  • ATPase, H+ Transporting, Lysosomal 9kDa, V0 Subunit E 2
  • H(+)-Transporting Two-Sector ATPase, Subunit H 3
  • Vacuolar Proton-ATPase Subunit M9.2 3
  • V-Type Proton ATPase Subunit E 1 3
  • Vacuolar ATP Synthase Subunit H 3
  • Vacuolar Proton Pump H Subunit 3
  • V-ATPase H Subunit 3
  • Vma21p 3
  • Vma21 3
  • M9.2 3

External Ids for ATP6V0E1 Gene

Previous HGNC Symbols for ATP6V0E1 Gene

  • ATP6H
  • ATP6V0E

Previous GeneCards Identifiers for ATP6V0E1 Gene

  • GC05P172344
  • GC05P167505
  • GC05P172410

Summaries for ATP6V0E1 Gene

Entrez Gene Summary for ATP6V0E1 Gene

  • This gene encodes a component of vacuolar ATPase (V-ATPase), a multisubunit enzyme that mediates acidification of eukaryotic intracellular organelles. V-ATPase dependent organelle acidification is necessary for such intracellular processes as protein sorting, zymogen activation, receptor-mediated endocytosis, and synaptic vesicle proton gradient generation. V-ATPase is composed of a cytosolic V1 domain and a transmembrane V0 domain. The V1 domain consists of three A and three B subunits, two G subunits plus the C, D, E, F, and H subunits. The V1 domain contains the ATP catalytic site. The V0 domain consists of five different subunits: a, c, c', c", and d. Additional isoforms of many of the V1 and V0 subunit proteins are encoded by multiple genes or alternatively spliced transcript variants. This encoded protein is possibly part of the V0 subunit. Since two nontranscribed pseudogenes have been found in dog, it is possible that the localization to chromosome 2 for this gene by radiation hybrid mapping is representing a pseudogene. Genomic mapping puts the chromosomal location on 5q35.3. [provided by RefSeq, Jul 2008]

GeneCards Summary for ATP6V0E1 Gene

ATP6V0E1 (ATPase H+ Transporting V0 Subunit E1) is a Protein Coding gene. Among its related pathways are Rheumatoid arthritis and Insulin receptor recycling. Gene Ontology (GO) annotations related to this gene include transporter activity and proton-transporting ATPase activity, rotational mechanism. An important paralog of this gene is ATP6V0E2.

UniProtKB/Swiss-Prot for ATP6V0E1 Gene

  • Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Tocris Summary for ATP6V0E1 Gene

  • H+-ATPase (also known as vacuolar ATPase, V-ATPase) is a enzyme transporter that functions to acidify intracellular compartments in eukaryotic cells. It is ubiquitously expressed and is present in endomembrane organelles such as vacuoles, lysosomes and endosomes.

Gene Wiki entry for ATP6V0E1 Gene

Additional gene information for ATP6V0E1 Gene

No data available for CIViC summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP6V0E1 Gene

Genomics for ATP6V0E1 Gene

GeneHancer (GH) Regulatory Elements for ATP6V0E1 Gene

Promoters and enhancers for ATP6V0E1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J172982 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 +0.5 528 3 PKNOX1 CLOCK SMAD1 FOXA2 ARNT ZFP64 ARID4B SIN3A ZBTB7B YY1 ATP6V0E1 SH3PXD2B CREBRF ENSG00000254328 BNIP1
GH05J173033 Enhancer 1 Ensembl ENCODE 16.7 +52.0 52046 3.6 HDGF EBF1 BMI1 BATF IRF4 NFATC1 EED ATF7 ETV6 BCLAF1 ATP6V0E1 CREBRF ENSG00000254328 LOC100268168 ENSG00000254295 RPL26L1 GC05P173039 GC05P173021
GH05J173014 Enhancer 1.3 FANTOM5 Ensembl ENCODE 11.6 +33.0 33043 4.8 PKNOX1 FOXA2 ARID4B RARA ZNF335 ZNF614 EGR1 FOS RXRA NFYC CREBRF ENSG00000207210 ATP6V0E1 ENSG00000254328 LOC100268168 RPL26L1 ENSG00000254295 BNIP1 ENSG00000253172 LOC401218
GH05J173010 Enhancer 1 Ensembl ENCODE 11.7 +28.0 28022 3.2 HDGF SOX13 CTCF SAP130 ARID4B ERF EBF1 CEBPG BATF ZSCAN9 BNIP1 ENSG00000207210 CREBRF ENSG00000254328 ATP6V0E1 ENSG00000253172 LOC100268168 RPL26L1 ENSG00000254295 GC05P173022
GH05J172950 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.2 -29.7 -29746 7.9 PKNOX1 SREBF2 SIN3A RFX5 ELK1 ZFP91 RCOR1 FOS CEBPB REST RPL26L1 ENSG00000254295 DUSP1 ATP6V0E1 ERGIC1 LOC100268168
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ATP6V0E1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ATP6V0E1 gene promoter:
  • HNF-1A
  • HNF-1
  • AML1a
  • IRF-1
  • Pax-2
  • Pax-2a
  • Pax-2b
  • FAC1
  • c-Ets-1
  • C/EBPbeta

Genomic Locations for ATP6V0E1 Gene

Genomic Locations for ATP6V0E1 Gene
51,689 bases
Plus strand
51,689 bases
Plus strand

Genomic View for ATP6V0E1 Gene

Genes around ATP6V0E1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP6V0E1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP6V0E1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP6V0E1 Gene

Proteins for ATP6V0E1 Gene

  • Protein details for ATP6V0E1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    V-type proton ATPase subunit e 1
    Protein Accession:
    Secondary Accessions:
    • B2R557
    • D3DQM1
    • Q6IBE8

    Protein attributes for ATP6V0E1 Gene

    81 amino acids
    Molecular mass:
    9374 Da
    Quaternary structure:
    • Composed of at least 10 subunits.
    • Sequence=CAA75571.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ATP6V0E1 Gene

Post-translational modifications for ATP6V0E1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ATP6V0E1 Gene

No data available for DME Specific Peptides for ATP6V0E1 Gene

Domains & Families for ATP6V0E1 Gene

Gene Families for ATP6V0E1 Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for ATP6V0E1 Gene

Suggested Antigen Peptide Sequences for ATP6V0E1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the V-ATPase e1/e2 subunit family.
  • Belongs to the V-ATPase e1/e2 subunit family.
genes like me logo Genes that share domains with ATP6V0E1: view

Function for ATP6V0E1 Gene

Molecular function for ATP6V0E1 Gene

UniProtKB/Swiss-Prot Function:
Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Phenotypes From GWAS Catalog for ATP6V0E1 Gene

Gene Ontology (GO) - Molecular Function for ATP6V0E1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005215 transporter activity NAS 9556572
GO:0015078 proton transmembrane transporter activity IEA --
GO:0016787 hydrolase activity IEA --
GO:0042625 ATPase coupled ion transmembrane transporter activity ISS --
GO:0046961 proton-transporting ATPase activity, rotational mechanism TAS,IGI 17350184
genes like me logo Genes that share ontologies with ATP6V0E1: view
genes like me logo Genes that share phenotypes with ATP6V0E1: view

Animal Model Products

CRISPR Products

miRNA for ATP6V0E1 Gene

miRTarBase miRNAs that target ATP6V0E1

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ATP6V0E1

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ATP6V0E1 Gene

Localization for ATP6V0E1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ATP6V0E1 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ATP6V0E1 gene
Compartment Confidence
endosome 4
extracellular 3
plasma membrane 1
nucleus 1

Gene Ontology (GO) - Cellular Components for ATP6V0E1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010008 endosome membrane TAS --
GO:0016020 membrane TAS 9556572
GO:0016021 integral component of membrane IEA --
GO:0030670 phagocytic vesicle membrane TAS --
GO:0033179 proton-transporting V-type ATPase, V0 domain IEA --
genes like me logo Genes that share ontologies with ATP6V0E1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for ATP6V0E1 Gene

Pathways & Interactions for ATP6V0E1 Gene

genes like me logo Genes that share pathways with ATP6V0E1: view

Gene Ontology (GO) - Biological Process for ATP6V0E1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006811 ion transport IEA --
GO:0007035 vacuolar acidification ISS --
GO:0008286 insulin receptor signaling pathway TAS --
GO:0015991 ATP hydrolysis coupled proton transport IEA --
GO:0016241 regulation of macroautophagy NAS 22982048
genes like me logo Genes that share ontologies with ATP6V0E1: view

No data available for SIGNOR curated interactions for ATP6V0E1 Gene

Drugs & Compounds for ATP6V0E1 Gene

(15) Drugs for ATP6V0E1 Gene - From: HMDB and Tocris

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Digoxin Approved Pharma Na+/K+ ATPase inhibitor 146
Water Approved Pharma 0
Brefeldin A Experimental Pharma Disrupts protein translocation to Golgi 0
Bafilomycin A1 Experimental Pharma V-ATPase inhibitor,selective and reversible, H+-ATPase (vacuolar) inhibitor 0
ATP Investigational Nutra Agonist, Activator, Full agonist, Antagonist, Potentiation, Pore Blocker 0

(3) Additional Compounds for ATP6V0E1 Gene - From: HMDB and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
  • 5'-Adenylphosphoric acid
  • Adenosine 5'-diphosphate
  • ADENOSINE-5'-diphosphATE
  • H3ADP
  • 5'-Adenylphosphate
Full agonist, Agonist, Partial agonist, Antagonist, Gating inhibitor 58-64-0
  • [po(OH)3]
  • Acide phosphorique
  • Acidum phosphoricum
  • H3PO4
  • Orthophosphoric acid

(2) Tocris Compounds for ATP6V0E1 Gene

Compound Action Cas Number
Bafilomycin A1 H+-ATPase (vacuolar) inhibitor 88899-55-2
Concanamycin A H+-ATPase (vacuolar) inhibitor 80890-47-7
genes like me logo Genes that share compounds with ATP6V0E1: view

Transcripts for ATP6V0E1 Gene

mRNA/cDNA for ATP6V0E1 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(620) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ATP6V0E1 Gene

ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ATP6V0E1

Alternative Splicing Database (ASD) splice patterns (SP) for ATP6V0E1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b · 4c
SP2: -
SP3: -

Relevant External Links for ATP6V0E1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ATP6V0E1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATP6V0E1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ATP6V0E1 Gene

This gene is overexpressed in Whole Blood (x7.1).

NURSA nuclear receptor signaling pathways regulating expression of ATP6V0E1 Gene:


SOURCE GeneReport for Unigene cluster for ATP6V0E1 Gene:


mRNA Expression by UniProt/SwissProt for ATP6V0E1 Gene:

Tissue specificity: Ubiquitous.

Evidence on tissue expression from TISSUES for ATP6V0E1 Gene

  • Nervous system(4)
  • Pancreas(3.6)
  • Skin(3.6)
  • Lung(3.4)
  • Eye(2.3)
  • Thyroid gland(2.3)
  • Gall bladder(2.2)
  • Kidney(2.2)
  • Lymph node(2.2)
  • Adrenal gland(2.1)
  • Heart(2.1)
  • Intestine(2.1)
  • Muscle(2.1)
  • Spleen(2)
  • Stomach(2)
genes like me logo Genes that share expression patterns with ATP6V0E1: view

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP6V0E1 Gene

Orthologs for ATP6V0E1 Gene

This gene was present in the common ancestor of animals.

Orthologs for ATP6V0E1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ATP6V0E1 34 33
  • 99.59 (n)
(Canis familiaris)
Mammalia ATP6V0E1 34 33
  • 94.24 (n)
(Bos Taurus)
Mammalia ATP6V0E1 34 33
  • 93.83 (n)
(Ornithorhynchus anatinus)
Mammalia ATP6V0E1 34
  • 93 (a)
(Rattus norvegicus)
Mammalia Atp6v0e1 33
  • 90.95 (n)
(Mus musculus)
Mammalia Atp6v0e 16 34 33
  • 90.53 (n)
(Monodelphis domestica)
Mammalia ATP6V0E1 34
  • 78 (a)
(Gallus gallus)
Aves ATP6V0E1 34 33
  • 76.54 (n)
(Anolis carolinensis)
Reptilia ATP6V0E1 34
  • 80 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia atp6v0e1 33
  • 76.54 (n)
Str.1594 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.4166 33
(Danio rerio)
Actinopterygii atpv0e1 34 33
  • 65.02 (n)
Dr.11059 33
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10092 33
fruit fly
(Drosophila melanogaster)
Insecta VhaM9.7-a 34
  • 34 (a)
VhaM9.7-b 34
  • 34 (a)
VhaM9.7-c 34
  • 30 (a)
(Caenorhabditis elegans)
Secernentea vha-17 34
  • 42 (a)
Species where no ortholog for ATP6V0E1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ATP6V0E1 Gene

Gene Tree for ATP6V0E1 (if available)
Gene Tree for ATP6V0E1 (if available)
Evolutionary constrained regions (ECRs) for ATP6V0E1: view image

Paralogs for ATP6V0E1 Gene

Paralogs for ATP6V0E1 Gene

(1) SIMAP similar genes for ATP6V0E1 Gene using alignment to 3 proteins:

  • J3KN48_HUMAN Pseudogenes for ATP6V0E1 Gene

genes like me logo Genes that share paralogs with ATP6V0E1: view

Variants for ATP6V0E1 Gene

Sequence variations from dbSNP and Humsavar for ATP6V0E1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000004994 -- 173,004,341(+) C/A intron_variant
rs1000025058 -- 173,008,610(+) C/G intron_variant
rs1000077364 -- 173,008,170(+) A/T intron_variant
rs1000109611 -- 172,995,996(+) G/A intron_variant
rs1000128985 -- 173,013,783(+) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ATP6V0E1 Gene

Variant ID Type Subtype PubMed ID
dgv361n21 CNV loss 19592680
esv2659869 CNV deletion 23128226
esv3607602 CNV loss 21293372
esv3607603 CNV loss 21293372
esv3607605 CNV loss 21293372
nsv327510 CNV deletion 16902084
nsv830555 CNV loss 17160897
nsv968271 CNV duplication 23825009

Variation tolerance for ATP6V0E1 Gene

Residual Variation Intolerance Score: 43.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.04; 0.90% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ATP6V0E1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ATP6V0E1 Gene

Disorders for ATP6V0E1 Gene

Additional Disease Information for ATP6V0E1

No disorders were found for ATP6V0E1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP6V0E1 Gene

Publications for ATP6V0E1 Gene

  1. Identification and characterization of a novel 9.2-kDa membrane sector-associated protein of vacuolar proton-ATPase from chromaffin granules. (PMID: 9556572) Ludwig J … Schägger H (The Journal of biological chemistry 1998) 2 3 4 58
  2. Molecular cloning and characterization of a novel form of the human vacuolar H+-ATPase e-subunit: an essential proton pump component. (PMID: 17350184) Blake-Palmer KG … Karet FE (Gene 2007) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. The yeast vacuolar proton-translocating ATPase contains a subunit homologous to the Manduca sexta and bovine e subunits that is essential for function. (PMID: 14970230) Sambade M … Kane PM (The Journal of biological chemistry 2004) 2 3 58
  5. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58

Products for ATP6V0E1 Gene

Sources for ATP6V0E1 Gene

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