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Aliases for ATP5F1B Gene

Aliases for ATP5F1B Gene

  • ATP Synthase F1 Subunit Beta 2 3 4 5
  • ATP Synthase, H+ Transporting, Mitochondrial F1 Complex, Beta Polypeptide 2 3
  • ATP5B 3 4
  • ATPSB 3 4
  • ATPMB 3 4
  • Mitochondrial ATP Synthetase, Beta Subunit 3
  • ATP Synthase Subunit Beta, Mitochondrial 3
  • Mitochondrial ATP Synthase Beta Subunit 3
  • Epididymis Secretory Protein Li 271 3
  • EC 3.6.3.14 4
  • HEL-S-271 3

External Ids for ATP5F1B Gene

Previous HGNC Symbols for ATP5F1B Gene

  • ATPSB
  • ATP5B

Summaries for ATP5F1B Gene

Entrez Gene Summary for ATP5F1B Gene

  • This gene encodes a subunit of mitochondrial ATP synthase. Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. ATP synthase is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, comprising the proton channel. The catalytic portion of mitochondrial ATP synthase consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and a single representative of the other 3. The proton channel consists of three main subunits (a, b, c). This gene encodes the beta subunit of the catalytic core. [provided by RefSeq, Jul 2008]

GeneCards Summary for ATP5F1B Gene

ATP5F1B (ATP Synthase F1 Subunit Beta) is a Protein Coding gene. Among its related pathways are Organelle biogenesis and maintenance and Metabolism.

UniProtKB/Swiss-Prot for ATP5F1B Gene

  • Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Gene Wiki entry for ATP5F1B Gene

Additional gene information for ATP5F1B Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP5F1B Gene

Genomics for ATP5F1B Gene

GeneHancer (GH) Regulatory Elements for ATP5F1B Gene

Promoters and enhancers for ATP5F1B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J056644 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 656.4 +0.3 337 2.4 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B NEUROD1 SIN3A DMAP1 ZNF2 ATP5F1B GC12M056644 GC12M056646 GC12M056647 SNORD59A SNORD59B BAZ2A DNAJC14 ZC3H10 NEMP1
GH12J056718 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 15.8 -76.5 -76490 8.9 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC NACA BAZ2A DNAJC14 NEMP1 ZBTB39 ANKRD52 PRIM1 IKZF4 ENSG00000257740 ZC3H10
GH12J056748 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 14.7 -104.9 -104891 4.1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B ZNF213 E2F8 ZNF143 PRIM1 HSD17B6 BAZ2A MBD6 NEMP1 RN7SL809P CDK2 ZC3H10 TMEM198B DNAJC14
GH12J056631 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 7.8 +11.1 11149 6.9 MLX ZFP64 FEZF1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC BAZ2A IKZF4 ENSG00000257740 SMARCC2 SLC26A10 ANKRD52 ENSG00000224713 DTX3 ARHGEF25 PAN2
GH12J056683 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.2 -40.7 -40703 7.8 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 PTGES3 GC12M056688 BAZ2A NEMP1 ZC3H10 RN7SL809P MBD6 DNAJC14 ENSG00000258317 RNU6-343P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ATP5F1B on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATP5F1B Gene

Genomic Locations for ATP5F1B Gene
chr12:56,638,175-56,646,068
(GRCh38/hg38)
Size:
7,894 bases
Orientation:
Minus strand
chr12:57,031,959-57,039,852
(GRCh37/hg19)
Size:
7,894 bases
Orientation:
Minus strand

Genomic View for ATP5F1B Gene

Genes around ATP5F1B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP5F1B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP5F1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP5F1B Gene

Proteins for ATP5F1B Gene

  • Protein details for ATP5F1B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P06576-ATPB_HUMAN
    Recommended name:
    ATP synthase subunit beta, mitochondrial
    Protein Accession:
    P06576
    Secondary Accessions:
    • A8K4X0
    • Q14283

    Protein attributes for ATP5F1B Gene

    Size:
    529 amino acids
    Molecular mass:
    56560 Da
    Quaternary structure:
    • F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c. Component of an ATP synthase complex composed of ATP5F1, ATP5MC1, ATP5F1E, ATP5H, ATP5I, ATP5J, ATP5J2, MT-ATP6, MT-ATP8, ATP5F1A, ATP5F1B, ATP5F1D, ATP5F1C, ATP5O, ATP5L, USMG5 and MP68. Interacts with PPIF. Interacts with BCL2L1 isoform BCL-X(L); the interaction mediates the association of BCL2L1 isoform BCL-X(L) with the mitochondrial membrane F(1)F(0) ATP synthase and enhances neurons metabolic efficency. Interacts with CLN5 and PPT1.

neXtProt entry for ATP5F1B Gene

Post-translational modifications for ATP5F1B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ATP5F1B Gene

No data available for DME Specific Peptides for ATP5F1B Gene

Domains & Families for ATP5F1B Gene

Gene Families for ATP5F1B Gene

HGNC:
Human Protein Atlas (HPA):
  • Cancer-related genes
  • Enzymes
  • Plasma proteins
  • Predicted intracellular proteins

Suggested Antigen Peptide Sequences for ATP5F1B Gene

Graphical View of Domain Structure for InterPro Entry

P06576

UniProtKB/Swiss-Prot:

ATPB_HUMAN :
  • Belongs to the ATPase alpha/beta chains family.
Family:
  • Belongs to the ATPase alpha/beta chains family.
genes like me logo Genes that share domains with ATP5F1B: view

Function for ATP5F1B Gene

Molecular function for ATP5F1B Gene

UniProtKB/Swiss-Prot Function:
Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
UniProtKB/Swiss-Prot CatalyticActivity:
ATP + H(2)O + H(+)(In) = ADP + phosphate + H(+)(Out).

Enzyme Numbers (IUBMB) for ATP5F1B Gene

Phenotypes From GWAS Catalog for ATP5F1B Gene

Gene Ontology (GO) - Molecular Function for ATP5F1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005215 transporter activity NAS 2870059
GO:0005515 protein binding IPI 10077593
GO:0005524 ATP binding IEA --
GO:0016787 hydrolase activity IEA --
GO:0016887 contributes_to ATPase activity IDA 12110673
genes like me logo Genes that share ontologies with ATP5F1B: view
genes like me logo Genes that share phenotypes with ATP5F1B: view

Animal Models for ATP5F1B Gene

MGI Knock Outs for ATP5F1B:
  • Atp5b Atp5b<tm1b(EUCOMM)Hmgu>

Animal Model Products

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ATP5F1B Gene

Localization for ATP5F1B Gene

Subcellular locations from UniProtKB/Swiss-Prot for ATP5F1B Gene

Mitochondrion inner membrane; Peripheral membrane protein; Matrix side.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ATP5F1B gene
Compartment Confidence
plasma membrane 5
extracellular 5
mitochondrion 5
nucleus 5
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for ATP5F1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus HDA 21630459
GO:0005739 mitochondrion IDA,IEA 2870059
GO:0005743 mitochondrial inner membrane IEA --
GO:0005753 mitochondrial proton-transporting ATP synthase complex IDA 12110673
GO:0005754 mitochondrial proton-transporting ATP synthase, catalytic core NAS 2870059
genes like me logo Genes that share ontologies with ATP5F1B: view

Pathways & Interactions for ATP5F1B Gene

genes like me logo Genes that share pathways with ATP5F1B: view

Gene Ontology (GO) - Biological Process for ATP5F1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001525 angiogenesis IMP 17510399
GO:0001649 osteoblast differentiation HDA 16210410
GO:0006091 generation of precursor metabolites and energy NAS 2870059
GO:0006629 lipid metabolic process IEA --
GO:0006754 ATP biosynthetic process TAS --
genes like me logo Genes that share ontologies with ATP5F1B: view

No data available for SIGNOR curated interactions for ATP5F1B Gene

Drugs & Compounds for ATP5F1B Gene

(10) Drugs for ATP5F1B Gene - From: DrugBank, ApexBio, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Inositol nicotinate Approved, Withdrawn Pharma Enzyme, inhibitor 0
1-ACETYL-2-CARBOXYPIPERIDINE Experimental Pharma Target 0
AUROVERTIN B Experimental Pharma Target 0
N1-(2-AMINO-4-METHYLPENTYL)OCTAHYDRO-PYRROLO[1,2-A] PYRIMIDINE Experimental Pharma Target 0
piceatannol Experimental Pharma Target p56lck/Syk inhibitor 0

(1) Additional Compounds for ATP5F1B Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with ATP5F1B: view

Transcripts for ATP5F1B Gene

mRNA/cDNA for ATP5F1B Gene

Alternative Splicing Database (ASD) splice patterns (SP) for ATP5F1B Gene

No ASD Table

Relevant External Links for ATP5F1B Gene

GeneLoc Exon Structure for
ATP5F1B
ECgene alternative splicing isoforms for
ATP5F1B

Expression for ATP5F1B Gene

NURSA nuclear receptor signaling pathways regulating expression of ATP5F1B Gene:

ATP5F1B

Evidence on tissue expression from TISSUES for ATP5F1B Gene

  • Nervous system(5)
  • Liver(4.9)
  • Lung(4.6)
  • Eye(4.5)
  • Intestine(4.4)
  • Skin(4.4)
  • Muscle(4.2)
  • Pancreas(3.8)
  • Heart(3.7)
  • Kidney(3.6)
  • Stomach(3.3)
  • Blood(3.2)
  • Thyroid gland(2.8)
  • Adrenal gland(2.4)
  • Bone marrow(2.3)
  • Lymph node(2.3)
  • Bone(2.2)
  • Gall bladder(2.2)
  • Spleen(2.1)
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP5F1B Gene

Orthologs for ATP5F1B Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ATP5F1B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ATP5B 34 33
  • 99.31 (n)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ATP5B 34
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ATP5B 34
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ATP5B 34 33
  • 92.68 (n)
OneToOne
dog
(Canis familiaris)
Mammalia ATP5B 34 33
  • 92.35 (n)
OneToMany
-- 34
  • 74 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Atp5b 16 34 33
  • 89.22 (n)
rat
(Rattus norvegicus)
Mammalia Atp5b 33
  • 89.1 (n)
chicken
(Gallus gallus)
Aves ATP5B 34 33
  • 78.03 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ATP5B 34
  • 90 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia atp5b 33
  • 78.93 (n)
Str.20526 33
African clawed frog
(Xenopus laevis)
Amphibia atp5b-prov 33
zebrafish
(Danio rerio)
Actinopterygii ATP5B 34
  • 83 (a)
OneToOne
atp5b 33
  • 78.79 (n)
hmzehn0534 33
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8681 33
fruit fly
(Drosophila melanogaster)
Insecta ATPsyn-beta 34 33
  • 74.67 (n)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP012106 33
  • 70.05 (n)
worm
(Caenorhabditis elegans)
Secernentea atp-2 34 33
  • 70.02 (n)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ATP2 36 34 33
  • 69.13 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D10703g 33
  • 68.53 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ABR169W 33
  • 68.4 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G08670 33
  • 68.22 (n)
soybean
(Glycine max)
eudicotyledons Gma.1312 33
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.7062 33
rice
(Oryza sativa)
Liliopsida Os05g0553000 33
  • 69.2 (n)
barley
(Hordeum vulgare)
Liliopsida Hv.1223 33
wheat
(Triticum aestivum)
Liliopsida Ta.5 33
corn
(Zea mays)
Liliopsida Zm.957 33
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4294 34
  • 74 (a)
OneToOne
Cin.4478 33
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes atp2 33
  • 70.18 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU05430 33
  • 68.79 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.4478 33
Species where no ortholog for ATP5F1B was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for ATP5F1B Gene

ENSEMBL:
Gene Tree for ATP5F1B (if available)
TreeFam:
Gene Tree for ATP5F1B (if available)
Aminode:
Evolutionary constrained regions (ECRs) for ATP5F1B: view image

Paralogs for ATP5F1B Gene

Pseudogenes.org Pseudogenes for ATP5F1B Gene

genes like me logo Genes that share paralogs with ATP5F1B: view

No data available for Paralogs for ATP5F1B Gene

Variants for ATP5F1B Gene

Sequence variations from dbSNP and Humsavar for ATP5F1B Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000934141 -- 56,647,665(-) C/T upstream_transcript_variant
rs1000965276 -- 56,647,492(-) A/C/G upstream_transcript_variant
rs1001121129 -- 56,642,141(-) G/A/C intron_variant
rs1001423573 -- 56,647,201(-) G/T upstream_transcript_variant
rs1002123788 -- 56,647,014(-) C/G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ATP5F1B Gene

Variant ID Type Subtype PubMed ID
nsv482992 CNV gain+loss 15286789

Variation tolerance for ATP5F1B Gene

Residual Variation Intolerance Score: 50.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.83; 58.56% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ATP5F1B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP5F1B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ATP5F1B Gene

Disorders for ATP5F1B Gene

No disorders were found for ATP5F1B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP5F1B Gene

Publications for ATP5F1B Gene

  1. The human ATP synthase beta subunit gene: sequence analysis, chromosome assignment, and differential expression. (PMID: 2687158) Neckelmann N … Liu JD (Genomics 1989) 2 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. Vectorial proteomics reveal targeting, phosphorylation and specific fragmentation of polymerase I and transcript release factor (PTRF) at the surface of caveolae in human adipocytes. (PMID: 15242332) Aboulaich N … Vener AV (The Biochemical journal 2004) 3 4 58
  4. ETS transcription factors regulate the expression of the gene for the human mitochondrial ATP synthase beta-subunit. (PMID: 7798271) Villena JA … Villarroya F (The Journal of biological chemistry 1994) 3 22 58
  5. Gene structure of the human mitochondrial adenosine triphosphate synthase beta subunit. (PMID: 2900241) Ohta S … Kagawa Y (The Journal of biological chemistry 1988) 3 4 58

Products for ATP5F1B Gene

Sources for ATP5F1B Gene

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