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Aliases for ATP2C2-AS1 Gene

Subcategory (RNA class) for ATP2C2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ATP2C2-AS1 Gene

  • ATP2C2 Antisense RNA 1 2 3 5
  • RP11-517C16.2-001 3

External Ids for ATP2C2-AS1 Gene

Summaries for ATP2C2-AS1 Gene

GeneCards Summary for ATP2C2-AS1 Gene

ATP2C2-AS1 (ATP2C2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ATP2C2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP2C2-AS1 Gene

Genomics for ATP2C2-AS1 Gene

GeneHancer (GH) Regulatory Elements for ATP2C2-AS1 Gene

Promoters and enhancers for ATP2C2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J084498 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 6.3 -34.5 -34536 8.4 HDGF PKNOX1 CLOCK ARID4B NEUROD1 SIN3A DMAP1 ZNF2 ZBTB7B SLC30A9 TLDC1 ENSG00000260300 KLHL36 ATP2C2-AS1 HSBP1 ENSG00000261243
GH16J084474 Enhancer 0.7 ENCODE 14.2 -7.2 -7189 1.4 SOX13 PKNOX1 ESRRA NFIB ARID4B SIN3A RARA TEAD3 CTBP1 GATA3 ATP2C2-AS1 PIR39222
GH16J084477 Enhancer 0.6 ENCODE 15.7 -10.1 -10109 1.6 MAFG MNT ZFHX2 ZNF316 E2F8 EGR1 IKZF1 FOSL2 FOS EMSY ATP2C2-AS1 USP10 KCNG4 HSDL1 DNAAF1 PIR39222 TLDC1
GH16J084825 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 5.6 -364.8 -364828 15.3 PKNOX1 ATF1 BMI1 ZNF121 EGR1 SCRT2 ZNF143 FOS ATF7 RCOR1 CRISPLD2 GSE1 ZDHHC7 ENSG00000260859 ATP2C2-AS1 LOC123862
GH16J084512 Enhancer 1.4 FANTOM5 Ensembl ENCODE 6.2 -45.8 -45838 4.3 HDGF SMAD1 IRF4 ZNF207 ZNF143 ATF7 RUNX3 RXRA ZHX2 MXD4 ATP2C2-AS1 COTL1 ENSG00000261243 TLDC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ATP2C2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATP2C2-AS1 Gene

Genomic Locations for ATP2C2-AS1 Gene
chr16:84,459,259-84,468,407
(GRCh38/hg38)
Size:
9,149 bases
Orientation:
Minus strand
chr16:84,492,865-84,500,967
(GRCh37/hg19)
Size:
8,103 bases
Orientation:
Minus strand

Genomic View for ATP2C2-AS1 Gene

Genes around ATP2C2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP2C2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP2C2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP2C2-AS1 Gene

Proteins for ATP2C2-AS1 Gene

Post-translational modifications for ATP2C2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP2C2-AS1 Gene

Domains & Families for ATP2C2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP2C2-AS1 Gene

Function for ATP2C2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP2C2-AS1 Gene

Localization for ATP2C2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP2C2-AS1 Gene

Pathways & Interactions for ATP2C2-AS1 Gene

SuperPathways for ATP2C2-AS1 Gene

No Data Available

Interacting Proteins for ATP2C2-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP2C2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP2C2-AS1 Gene

Drugs & Compounds for ATP2C2-AS1 Gene

No Compound Related Data Available

Transcripts for ATP2C2-AS1 Gene

mRNA/cDNA for ATP2C2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP2C2-AS1 Gene

No ASD Table

Relevant External Links for ATP2C2-AS1 Gene

GeneLoc Exon Structure for
ATP2C2-AS1
ECgene alternative splicing isoforms for
ATP2C2-AS1

Expression for ATP2C2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP2C2-AS1 Gene

Orthologs for ATP2C2-AS1 Gene

Evolution for ATP2C2-AS1 Gene

ENSEMBL:
Gene Tree for ATP2C2-AS1 (if available)
TreeFam:
Gene Tree for ATP2C2-AS1 (if available)

No data available for Orthologs for ATP2C2-AS1 Gene

Paralogs for ATP2C2-AS1 Gene

No data available for Paralogs for ATP2C2-AS1 Gene

Variants for ATP2C2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP2C2-AS1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000221061 -- 84,464,815(-) C/T intron_variant
rs1000392899 -- 84,460,208(-) C/T non_coding_transcript_variant
rs1000696788 -- 84,462,454(-) G/C non_coding_transcript_variant
rs1001142245 -- 84,467,354(-) C/T non_coding_transcript_variant
rs1001329478 -- 84,460,187(-) T/C non_coding_transcript_variant

Additional Variant Information for ATP2C2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP2C2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ATP2C2-AS1 Gene

Disorders for ATP2C2-AS1 Gene

Additional Disease Information for ATP2C2-AS1

No disorders were found for ATP2C2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP2C2-AS1 Gene

Publications for ATP2C2-AS1 Gene

  1. The Effect of Botulinum Toxin Type A on Expression Profiling of Long Noncoding RNAs in Human Dermal Fibroblasts. (PMID: 28265570) Miao YY … Zhou BR (BioMed research international 2017) 2 3 58
  2. Activity dependent LoNA regulates translation by coordinating rRNA transcription and methylation. (PMID: 29712923) Li D … Liu Q (Nature communications 2018) 3

Products for ATP2C2-AS1 Gene

Sources for ATP2C2-AS1 Gene

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