Aliases for ATP2C2-AS1 Gene

Subcategory (RNA class) for ATP2C2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ATP2C2-AS1 Gene

  • ATP2C2 Antisense RNA 1 2 3 5
  • ATP2C2-AS1 2 5 165
  • RP11-517C16.2-001 2 3
  • RP11-517C16.2 2 3
  • NONHSAG020161.2 91
  • HSALNG0113128 164

External Ids for ATP2C2-AS1 Gene

Summaries for ATP2C2-AS1 Gene

GeneCards Summary for ATP2C2-AS1 Gene

ATP2C2-AS1 (ATP2C2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ATP2C2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ATP2C2-AS1 Gene

Genomics for ATP2C2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ATP2C2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J084484 Enhancer 0.9 Ensembl ENCODE 18.9 -16.7 -16687 2.1 CTCF ZNF24 REST RAD21 SOX6 ZNF561 ZNF444 ESRRA SMC3 MYC ATP2C2-AS1 USP10 KCNG4 piR-46223 MEAK7 ATP2C2
GH16J084474 Enhancer 0.9 Ensembl ENCODE 18 -8.5 -8484 1.9 CREB1 TFE3 TARDBP SOX13 CTBP1 ESRRA PKNOX1 ZNF217 GATAD2B CUX1 ATP2C2-AS1 piR-46223 MEAK7 ATP2C2
GH16J084498 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 6.3 -35.6 -35582 8.4 SP1 HNRNPL CREB1 CTCF PRDM10 RFX1 ZNF692 FOS TARDBP JUND MEAK7 lnc-COTL1-1 ATP2C2-AS1 HSBP1 HSALNG0113141 ENSG00000261243 ATP2C2
GH16J084477 Enhancer 0.8 Ensembl ENCODE 15.7 -11.2 -11155 1.6 IKZF1 EGR1 ZNF316 MAFF FOS MAFK MAFG ZFHX2 BHLHE40 TOE1 ATP2C2-AS1 USP10 KCNG4 DNAAF1 HSDL1 piR-46223 MEAK7 ATP2C2
GH16J084825 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.6 -365.9 -365874 15.3 REST RFX1 IKZF1 FOXA1 NR2C1 SP1 ZNF600 ZNF341 SCRT2 CEBPB CRISPLD2 GSE1 ZDHHC7 ENSG00000260859 ATP2C2-AS1 piR-35674-201 ENSG00000285848
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ATP2C2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ATP2C2-AS1 Gene

Genomic Locations for ATP2C2-AS1 Gene
chr16:84,459,258-84,467,361
(GRCh38/hg38)
Size:
8,104 bases
Orientation:
Minus strand
chr16:84,492,865-84,500,967
(GRCh37/hg19)
Size:
8,103 bases
Orientation:
Minus strand

Genomic View for ATP2C2-AS1 Gene

Genes around ATP2C2-AS1 on UCSC Golden Path with GeneCards custom track
ATP2C2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ATP2C2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP2C2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP2C2-AS1 Gene

Proteins for ATP2C2-AS1 Gene

Post-translational modifications for ATP2C2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP2C2-AS1 Gene

Domains & Families for ATP2C2-AS1 Gene

Gene Families for ATP2C2-AS1 Gene

genes like me logo Genes that share domains with ATP2C2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ATP2C2-AS1 Gene

Function for ATP2C2-AS1 Gene

Phenotypes From GWAS Catalog for ATP2C2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP2C2-AS1 Gene

Localization for ATP2C2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP2C2-AS1 Gene

Pathways & Interactions for ATP2C2-AS1 Gene

PathCards logo

SuperPathways for ATP2C2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ATP2C2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ATP2C2-AS1 Gene

Drugs & Compounds for ATP2C2-AS1 Gene

No Compound Related Data Available

Transcripts for ATP2C2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ATP2C2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000050A665_9606 lncRNA 2998 5

HGNC: 53167,

RefSeq: NR_146503,

Ensembl: ENST00000565700 (view in UCSC) ,

LNCipedia: ATP2C2-AS1:4,

NONCODE: NONHSAT144067.2,

URS00008B6433_9606 lncRNA 645 3

LncBook: HSALNT0234503,

LNCipedia: ATP2C2-AS1:5,

NONCODE: NONHSAT144068.2,

URS0000EA7F35_9606 lncRNA 3001 1

LncBook: HSALNT0289472,

ATP2C2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ATP2C2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP2C2-AS1 Gene

No ASD Table

Relevant External Links for ATP2C2-AS1 Gene

GeneLoc Exon Structure for
ATP2C2-AS1

Expression for ATP2C2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP2C2-AS1 Gene

Orthologs for ATP2C2-AS1 Gene

Evolution for ATP2C2-AS1 Gene

ENSEMBL:
Gene Tree for ATP2C2-AS1 (if available)
TreeFam:
Gene Tree for ATP2C2-AS1 (if available)

No data available for Orthologs for ATP2C2-AS1 Gene

Paralogs for ATP2C2-AS1 Gene

No data available for Paralogs for ATP2C2-AS1 Gene

Variants for ATP2C2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ATP2C2-AS1 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
711182 Benign: not provided 84,462,089(-) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
712739 Likely Benign: not provided 84,462,023(-) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
714138 Likely Benign: not provided 84,459,381(-) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
718293 Benign: not provided 84,459,285(-) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
719266 Benign: not provided 84,463,704(-) G/C MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for ATP2C2-AS1 Gene

Additional Variant Information for ATP2C2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP2C2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ATP2C2-AS1 Gene

Disorders for ATP2C2-AS1 Gene

No disorders were found for ATP2C2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP2C2-AS1 Gene

Publications for ATP2C2-AS1 Gene

  1. Activity dependent LoNA regulates translation by coordinating rRNA transcription and methylation. (PMID: 29712923) Li D … Liu Q (Nature communications 2018) 2 3
  2. The Effect of Botulinum Toxin Type A on Expression Profiling of Long Noncoding RNAs in Human Dermal Fibroblasts. (PMID: 28265570) Miao YY … Zhou BR (BioMed research international 2017) 2 3

Products for ATP2C2-AS1 Gene

Sources for ATP2C2-AS1 Gene