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Aliases for ATP2B2-IT2 Gene

Subcategory (RNA class) for ATP2B2-IT2 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ATP2B2-IT2 Gene

  • ATP2B2 Intronic Transcript 2 2 3 5
  • ATP2B2 Intronic Transcript 2 (Non-Protein Coding) 2

External Ids for ATP2B2-IT2 Gene

Previous GeneCards Identifiers for ATP2B2-IT2 Gene

  • GC00U933010

Summaries for ATP2B2-IT2 Gene

GeneCards Summary for ATP2B2-IT2 Gene

ATP2B2-IT2 (ATP2B2 Intronic Transcript 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ATP2B2-IT2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP2B2-IT2 Gene

Genomics for ATP2B2-IT2 Gene

GeneHancer (GH) Regulatory Elements for ATP2B2-IT2 Gene

Promoters and enhancers for ATP2B2-IT2 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I010603 Enhancer 0.5 ENCODE 0.3 +23.2 23176 0.2 POLR2A ZNF341 NFE2 EBF1 RUNX3 ATP2B2-IT2 ATP2B2-IT1 ATP2B2
GH03I010703 Enhancer 0.4 ENCODE 0.2 -76.4 -76364 0.1 SP1 POLR2A ATP2B2 ATP2B2-IT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ATP2B2-IT2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATP2B2-IT2 Gene

Genomic Locations for ATP2B2-IT2 Gene
793 bases
Minus strand

Genomic View for ATP2B2-IT2 Gene

Genes around ATP2B2-IT2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP2B2-IT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP2B2-IT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP2B2-IT2 Gene

Proteins for ATP2B2-IT2 Gene

Post-translational modifications for ATP2B2-IT2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP2B2-IT2 Gene

Domains & Families for ATP2B2-IT2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP2B2-IT2 Gene

Function for ATP2B2-IT2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP2B2-IT2 Gene

Localization for ATP2B2-IT2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP2B2-IT2 Gene

Pathways & Interactions for ATP2B2-IT2 Gene

SuperPathways for ATP2B2-IT2 Gene

No Data Available

Interacting Proteins for ATP2B2-IT2 Gene

Gene Ontology (GO) - Biological Process for ATP2B2-IT2 Gene


No data available for Pathways by source and SIGNOR curated interactions for ATP2B2-IT2 Gene

Drugs & Compounds for ATP2B2-IT2 Gene

No Compound Related Data Available

Transcripts for ATP2B2-IT2 Gene

mRNA/cDNA for ATP2B2-IT2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ATP2B2-IT2 Gene

No ASD Table

Relevant External Links for ATP2B2-IT2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ATP2B2-IT2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATP2B2-IT2 Gene

mRNA differential expression in normal tissues according to GTEx for ATP2B2-IT2 Gene

This gene is overexpressed in Testis (x47.8).
genes like me logo Genes that share expression patterns with ATP2B2-IT2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP2B2-IT2 Gene

Orthologs for ATP2B2-IT2 Gene

Evolution for ATP2B2-IT2 Gene

Gene Tree for ATP2B2-IT2 (if available)
Gene Tree for ATP2B2-IT2 (if available)

No data available for Orthologs for ATP2B2-IT2 Gene

Paralogs for ATP2B2-IT2 Gene

No data available for Paralogs for ATP2B2-IT2 Gene

Variants for ATP2B2-IT2 Gene

Sequence variations from dbSNP and Humsavar for ATP2B2-IT2 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000612100 -- 10,626,873(-) C/G upstream_transcript_variant
rs1002132014 -- 10,625,525(-) C/T downstream_transcript_variant
rs1002465501 -- 10,626,970(-) G/C upstream_transcript_variant
rs1003791797 -- 10,628,682(-) G/A upstream_transcript_variant
rs1005424979 -- 10,627,666(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ATP2B2-IT2 Gene

Variant ID Type Subtype PubMed ID
dgv762e201 CNV deletion 23290073
esv4117 OTHER complex 18987735
nsv1073204 CNV deletion 25765185
nsv1121603 CNV deletion 24896259
nsv436362 CNV deletion 17901297
nsv436869 CNV insertion 17901297

Additional Variant Information for ATP2B2-IT2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP2B2-IT2 Gene

Disorders for ATP2B2-IT2 Gene

Additional Disease Information for ATP2B2-IT2

No disorders were found for ATP2B2-IT2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP2B2-IT2 Gene

Publications for ATP2B2-IT2 Gene

No publications were found for ATP2B2-IT2 Gene.

Products for ATP2B2-IT2 Gene

Sources for ATP2B2-IT2 Gene

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