Aliases for ATP2B1-AS1 Gene

Subcategory (RNA class) for ATP2B1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ATP2B1-AS1 Gene

  • ATP2B1 Antisense RNA 1 2 3 5
  • ATP2B1-AS1 2 5 165
  • Long Intergenic Non-Protein Coding RNA 936 2 3
  • NONHSAG011873.2 91
  • HSALNG0092957 164
  • LINC00936 3

External Ids for ATP2B1-AS1 Gene

Previous HGNC Symbols for ATP2B1-AS1 Gene

  • LINC00936

Summaries for ATP2B1-AS1 Gene

GeneCards Summary for ATP2B1-AS1 Gene

ATP2B1-AS1 (ATP2B1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ATP2B1-AS1 include Astrocytoma and Epidural Spinal Canal Neoplasm.

Additional gene information for ATP2B1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ATP2B1-AS1 Gene

Genomics for ATP2B1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ATP2B1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J089704 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.7 -654 7.4 RNF2 SP1 CREB1 HNRNPL PRDM10 REST ZNF629 LEF1 IKZF1 POLR2A ATP2B1 ATP2B1-AS1 ENSG00000258302 RNU6-148P ENSG00000257194 MN309488 POC1B-GALNT4
GH12J089942 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 4.7 +238.5 238504 9.7 ZNF221 CREB1 ATF7 PRDM10 ZNF629 RFX1 CTCF ZNF692 TARDBP ZHX2 LINC02399 ATP2B1 ENSG00000258302 POC1B ATP2B1-AS1 LOC105369890 ENSG00000258216
GH12J089768 Enhancer 1.4 FANTOM5 Ensembl ENCODE 4.8 +60.9 60872 3.2 CEBPG CREB1 CTCF ARID3A PRDM10 ZNF629 ZNF692 TARDBP ZHX2 JUND DUSP6 ATP2B1 ATP2B1-AS1 POC1B lnc-TMTC3-21 piR-45726-015 ENSG00000258216 LOC107984543
GH12J089932 Enhancer 0.9 Ensembl dbSUPER 4.7 +226.0 226046 4.4 FOXA1 POLR2A IKZF2 YY1 SCRT2 EED CEBPB ZSCAN5C ELF1 IKZF1 ATP2B1-AS1 LINC02399 LOC105369890 ENSG00000258216 ATP2B1
GH12J090152 Enhancer 0.5 Ensembl ENCODE 5.2 +444.4 444435 1.2 ZIC2 POLR2A ATP2B1-AS1 lnc-ATP2B1-2 HSALNG0092970 ATP2B1 CCER1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ATP2B1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ATP2B1-AS1 Gene

Genomic Locations for ATP2B1-AS1 Gene
chr12:89,708,954-89,713,726
(GRCh38/hg38)
Size:
4,773 bases
Orientation:
Plus strand
chr12:90,102,732-90,106,367
(GRCh37/hg19)
Size:
3,636 bases
Orientation:
Plus strand

Genomic View for ATP2B1-AS1 Gene

Genes around ATP2B1-AS1 on UCSC Golden Path with GeneCards custom track
ATP2B1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ATP2B1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP2B1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP2B1-AS1 Gene

Proteins for ATP2B1-AS1 Gene

Post-translational modifications for ATP2B1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP2B1-AS1 Gene

Domains & Families for ATP2B1-AS1 Gene

Gene Families for ATP2B1-AS1 Gene

genes like me logo Genes that share domains with ATP2B1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ATP2B1-AS1 Gene

Function for ATP2B1-AS1 Gene

Phenotypes From GWAS Catalog for ATP2B1-AS1 Gene

Phenotypes for ATP2B1-AS1 Gene

genes like me logo Genes that share phenotypes with ATP2B1-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP2B1-AS1 Gene

Localization for ATP2B1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP2B1-AS1 Gene

Pathways & Interactions for ATP2B1-AS1 Gene

PathCards logo

SuperPathways for ATP2B1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ATP2B1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ATP2B1-AS1 Gene

Drugs & Compounds for ATP2B1-AS1 Gene

No Compound Related Data Available

Transcripts for ATP2B1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ATP2B1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000037D223_9606 lncRNA 3632 3

Ensembl: ENST00000605386 (view in UCSC) ,

LNCipedia: ATP2B1-AS1:9,

NONCODE: NONHSAT029827.2,

URS000075E810_9606 lncRNA 2998 3

HGNC: 27883,

RefSeq: NR_028138,

LNCipedia: ATP2B1-AS1:8,

URS0000D5B776_9606 lncRNA 2464 2

LncBook: HSALNT0192698,

LNCipedia: ATP2B1-AS1:11,

URS0000D58E0C_9606 lncRNA 3937 1

LNCipedia: ATP2B1-AS1:13,

URS0000D57840_9606 lncRNA 3626 1

LNCipedia: ATP2B1-AS1:10,

ATP2B1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ATP2B1-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP2B1-AS1 Gene

No ASD Table

Relevant External Links for ATP2B1-AS1 Gene

GeneLoc Exon Structure for
ATP2B1-AS1

Expression for ATP2B1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ATP2B1-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP2B1-AS1 Gene

Orthologs for ATP2B1-AS1 Gene

Evolution for ATP2B1-AS1 Gene

ENSEMBL:
Gene Tree for ATP2B1-AS1 (if available)
TreeFam:
Gene Tree for ATP2B1-AS1 (if available)

No data available for Orthologs for ATP2B1-AS1 Gene

Paralogs for ATP2B1-AS1 Gene

No data available for Paralogs for ATP2B1-AS1 Gene

Variants for ATP2B1-AS1 Gene

Additional dbSNP identifiers (rs#s) for ATP2B1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ATP2B1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2773n54 CNV gain 21841781
dgv2774n54 CNV gain+loss 21841781
dgv2775n54 CNV loss 21841781
dgv2776n54 CNV gain+loss 21841781
esv28180 CNV loss 19812545
nsv559705 CNV gain 21841781
nsv559709 CNV gain 21841781
nsv559711 CNV gain 21841781
nsv559719 CNV loss 21841781
nsv559720 CNV loss 21841781

Additional Variant Information for ATP2B1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP2B1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ATP2B1-AS1 Gene

Disorders for ATP2B1-AS1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for ATP2B1-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
epidural spinal canal neoplasm
  • extradural tumor
spinal cord glioma
  • glial neoplasm spinal cord
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ATP2B1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ATP2B1-AS1 Gene

Publications for ATP2B1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for ATP2B1-AS1 Gene

Sources for ATP2B1-AS1 Gene