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Aliases for ATP2A1-AS1 Gene

Subcategory (RNA class) for ATP2A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ATP2A1-AS1 Gene

  • ATP2A1 Antisense RNA 1 2 3 5

External Ids for ATP2A1-AS1 Gene

Summaries for ATP2A1-AS1 Gene

GeneCards Summary for ATP2A1-AS1 Gene

ATP2A1-AS1 (ATP2A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ATP2A1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP2A1-AS1 Gene

Genomics for ATP2A1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ATP2A1-AS1 Gene

Promoters and enhancers for ATP2A1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I028874 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 0.8 +2.0 2008 6.4 HDGF FEZF1 GLI4 ZNF2 GLIS2 ZNF213 E2F8 ZNF143 KLF7 FOS ATP2A1 TUFM CD19 RABEP2 NFATC2IP CDC37P1 ATP2A1-AS1 GC16M028787 ENSG00000261766
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ATP2A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATP2A1-AS1 Gene

Genomic Locations for ATP2A1-AS1 Gene
chr16:28,878,957-28,879,921
(GRCh38/hg38)
Size:
965 bases
Orientation:
Minus strand
chr16:28,890,278-28,891,241
(GRCh37/hg19)

Genomic View for ATP2A1-AS1 Gene

Genes around ATP2A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP2A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP2A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP2A1-AS1 Gene

Proteins for ATP2A1-AS1 Gene

Post-translational modifications for ATP2A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP2A1-AS1 Gene

Domains & Families for ATP2A1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP2A1-AS1 Gene

Function for ATP2A1-AS1 Gene

Phenotypes From GWAS Catalog for ATP2A1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP2A1-AS1 Gene

Localization for ATP2A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP2A1-AS1 Gene

Pathways & Interactions for ATP2A1-AS1 Gene

SuperPathways for ATP2A1-AS1 Gene

No Data Available

Interacting Proteins for ATP2A1-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP2A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP2A1-AS1 Gene

Drugs & Compounds for ATP2A1-AS1 Gene

No Compound Related Data Available

Transcripts for ATP2A1-AS1 Gene

mRNA/cDNA for ATP2A1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP2A1-AS1 Gene

No ASD Table

Relevant External Links for ATP2A1-AS1 Gene

GeneLoc Exon Structure for
ATP2A1-AS1
ECgene alternative splicing isoforms for
ATP2A1-AS1

Expression for ATP2A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATP2A1-AS1 Gene

genes like me logo Genes that share expression patterns with ATP2A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP2A1-AS1 Gene

Orthologs for ATP2A1-AS1 Gene

Evolution for ATP2A1-AS1 Gene

ENSEMBL:
Gene Tree for ATP2A1-AS1 (if available)
TreeFam:
Gene Tree for ATP2A1-AS1 (if available)

No data available for Orthologs for ATP2A1-AS1 Gene

Paralogs for ATP2A1-AS1 Gene

No data available for Paralogs for ATP2A1-AS1 Gene

Variants for ATP2A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP2A1-AS1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs200428113 uncertain-significance, Brody myopathy 28,878,780(-) G/A downstream_transcript_variant
rs201212818 likely-benign, Brody myopathy 28,879,497(-) C/G intron_variant, non_coding_transcript_variant
rs369161791 uncertain-significance, Brody myopathy 28,880,904(-) C/T upstream_transcript_variant
rs75273069 benign, Brody myopathy, not specified 28,878,650(-) C/T downstream_transcript_variant
rs774708450 uncertain-significance, Brody myopathy 28,879,552(-) G/A non_coding_transcript_variant

Additional Variant Information for ATP2A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP2A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ATP2A1-AS1 Gene

Disorders for ATP2A1-AS1 Gene

Additional Disease Information for ATP2A1-AS1

No disorders were found for ATP2A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP2A1-AS1 Gene

Publications for ATP2A1-AS1 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58

Products for ATP2A1-AS1 Gene

Sources for ATP2A1-AS1 Gene

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