Aliases for ATP2A1-AS1 Gene

Subcategory (RNA class) for ATP2A1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ATP2A1-AS1 Gene

  • ATP2A1 Antisense RNA 1 2 3 5
  • ATP2A1-AS1 2 5 165
  • NONHSAG019003.2 91
  • HSALNG0110540 164

External Ids for ATP2A1-AS1 Gene

Previous GeneCards Identifiers for ATP2A1-AS1 Gene

  • GC16M028878

Summaries for ATP2A1-AS1 Gene

GeneCards Summary for ATP2A1-AS1 Gene

ATP2A1-AS1 (ATP2A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ATP2A1-AS1 include Brody Myopathy.

Additional gene information for ATP2A1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ATP2A1-AS1 Gene

Genomics for ATP2A1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ATP2A1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J028874 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +2.0 2008 6.4 RNF2 SP1 PRDM10 ZNF629 IKZF1 KDM1A CTCF ZNF692 POLR2A BACH1 ATP2A1 ATP2A1-AS1 TUFM CD19 RABEP2 NFATC2IP CDC37P1 lnc-SH2B1-1 SH2B1
GH16J028873 Enhancer 0.7 ENCODE 0.4 +6.2 6166 0.2 CTCF ZBTB33 PRDM10 LARP7 ZNF143 PATZ1 REST RAD21 TRIM22 ZNF341 NONHSAG019002.2 lnc-SH2B1-1 CD19 RABEP2 NFATC2IP ATP2A1 ATP2A1-AS1 SH2B1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ATP2A1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ATP2A1-AS1 Gene

Genomic Locations for ATP2A1-AS1 Gene
chr16:28,868,384-28,879,921
(GRCh38/hg38)
Size:
11,538 bases
Orientation:
Minus strand
chr16:28,890,278-28,891,241
(GRCh37/hg19)
Size:
964 bases
Orientation:
Minus strand

Genomic View for ATP2A1-AS1 Gene

Genes around ATP2A1-AS1 on UCSC Golden Path with GeneCards custom track
ATP2A1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ATP2A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP2A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP2A1-AS1 Gene

Proteins for ATP2A1-AS1 Gene

Post-translational modifications for ATP2A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP2A1-AS1 Gene

Domains & Families for ATP2A1-AS1 Gene

Gene Families for ATP2A1-AS1 Gene

genes like me logo Genes that share domains with ATP2A1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ATP2A1-AS1 Gene

Function for ATP2A1-AS1 Gene

Phenotypes From GWAS Catalog for ATP2A1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP2A1-AS1 Gene

Localization for ATP2A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP2A1-AS1 Gene

Pathways & Interactions for ATP2A1-AS1 Gene

PathCards logo

SuperPathways for ATP2A1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ATP2A1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ATP2A1-AS1 Gene

Drugs & Compounds for ATP2A1-AS1 Gene

No Compound Related Data Available

Transcripts for ATP2A1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ATP2A1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000042C988_9606 lncRNA 558 3

Ensembl: ENST00000561547 (view in UCSC) ,

LncBook: HSALNT0229415,

LNCipedia: ATP2A1-AS1:7,

URS0000031F73_9606 lncRNA 530 3

Ensembl: ENST00000566956 (view in UCSC) ,

LncBook: HSALNT0229414,

LNCipedia: ATP2A1-AS1:5,

URS000075E145_9606 lncRNA 584 2

HGNC: 51370,

RefSeq: NR_046287,

URS000075CD20_9606 lncRNA 581 1

RefSeq: NR_046288,

URS000075EE38_9606 lncRNA 531 1

RefSeq: NR_046289,

ATP2A1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ATP2A1-AS1 Gene

7 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP2A1-AS1 Gene

No ASD Table

Relevant External Links for ATP2A1-AS1 Gene

GeneLoc Exon Structure for
ATP2A1-AS1

Expression for ATP2A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ATP2A1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ATP2A1-AS1

genes like me logo Genes that share expression patterns with ATP2A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP2A1-AS1 Gene

Orthologs for ATP2A1-AS1 Gene

Evolution for ATP2A1-AS1 Gene

ENSEMBL:
Gene Tree for ATP2A1-AS1 (if available)
TreeFam:
Gene Tree for ATP2A1-AS1 (if available)

No data available for Orthologs for ATP2A1-AS1 Gene

Paralogs for ATP2A1-AS1 Gene

No data available for Paralogs for ATP2A1-AS1 Gene

Variants for ATP2A1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ATP2A1-AS1 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
648380 Uncertain Significance: Brody myopathy 28,879,572(-) T/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
719515 Likely Benign: not provided 28,879,559(-) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
rs1415021206 Uncertain Significance: Brody myopathy 28,879,117(-) G/GT SPLICE_DONOR_VARIANT
rs148925426 Benign: Brody myopathy; not provided 28,879,523(-) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
rs1555514587 Likely Benign: Brody myopathy 28,879,559(-) C/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for ATP2A1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ATP2A1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2830n100 CNV gain 25217958
dgv2831n100 CNV gain 25217958
dgv4987n54 CNV gain 21841781
esv2758640 CNV gain+loss 17122850
esv3570454 CNV gain 25503493
esv3638349 CNV gain 21293372
esv3892826 CNV gain+loss 25118596
nsv1059555 CNV gain 25217958
nsv518648 CNV loss 19592680
nsv519100 CNV gain 19592680
nsv571805 CNV loss 21841781

Additional Variant Information for ATP2A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP2A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP2A1-AS1 Gene

Disorders for ATP2A1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ATP2A1-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
brody myopathy
  • brody disease
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ATP2A1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ATP2A1-AS1 Gene

Publications for ATP2A1-AS1 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

Products for ATP2A1-AS1 Gene

Sources for ATP2A1-AS1 Gene