Aliases for ATP1A1-AS1 Gene

Subcategory (RNA class) for ATP1A1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for ATP1A1-AS1 Gene

  • ATP1A1 Antisense RNA 1 2 3 4 5
  • ATP1A1 Opposite Strand 2 3
  • ATP1A1-AS1 2 170
  • ATP1A1OS 3 4
  • C1orf203 3 4
  • Putative Uncharacterized Protein ATP1A1-AS1 4
  • Chromosome 1 Open Reading Frame 203 2
  • ATP1A1 Antisense Gene Protein 1 4
  • ATP1A1 Opposite Strand Protein 4
  • NONHSAG002530 94
  • HSALNG0006325 169

External Ids for ATP1A1-AS1 Gene

Previous HGNC Symbols for ATP1A1-AS1 Gene

  • C1orf203
  • ATP1A1OS

Previous GeneCards Identifiers for ATP1A1-AS1 Gene

  • GC01M116934

Summaries for ATP1A1-AS1 Gene

GeneCards Summary for ATP1A1-AS1 Gene

ATP1A1-AS1 (ATP1A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ATP1A1-AS1 include Charcot-Marie-Tooth Disease, Axonal, Type 2Dd and Hypomagnesemia, Seizures, And Mental Retardation 2.

Additional gene information for ATP1A1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ATP1A1-AS1 Gene

Genomics for ATP1A1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ATP1A1-AS1 Gene

Promoters and enhancers for ATP1A1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ATP1A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATP1A1-AS1 Gene

Genomic Locations for ATP1A1-AS1 Gene
chr1:116,390,575-116,418,635
(GRCh38/hg38)
Size:
28,061 bases
Orientation:
Minus strand
chr1:116,934,869-116,961,244
(GRCh37/hg19)
Size:
26,376 bases
Orientation:
Minus strand

Genomic View for ATP1A1-AS1 Gene

Genes around ATP1A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP1A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP1A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP1A1-AS1 Gene

Proteins for ATP1A1-AS1 Gene

  • Protein details for ATP1A1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TC04-ATAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein ATP1A1-AS1
    Protein Accession:
    Q5TC04

    Protein attributes for ATP1A1-AS1 Gene

    Size:
    95 amino acids
    Molecular mass:
    10240 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ATP1A1-AS1 Gene

Post-translational modifications for ATP1A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP1A1-AS1 Gene

Domains & Families for ATP1A1-AS1 Gene

Protein Domains for ATP1A1-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for ATP1A1-AS1 Gene

GenScript: Design optimal peptide antigens:
  • ATP1A1 opposite strand protein (ATPOS_HUMAN)
genes like me logo Genes that share domains with ATP1A1-AS1: view

No data available for Gene Families , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ATP1A1-AS1 Gene

Function for ATP1A1-AS1 Gene

Phenotypes From GWAS Catalog for ATP1A1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP1A1-AS1 Gene

Localization for ATP1A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP1A1-AS1 Gene

Pathways & Interactions for ATP1A1-AS1 Gene

PathCards logo

SuperPathways for ATP1A1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ATP1A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP1A1-AS1 Gene

Drugs & Compounds for ATP1A1-AS1 Gene

No Compound Related Data Available

Transcripts for ATP1A1-AS1 Gene

mRNA/cDNA for ATP1A1-AS1 Gene

(6) REFSEQ mRNAs :
(9) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) RNACentral transcripts :
(8) LNCipedia transcripts :
(7) LncBook transcripts :
(5) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ATP1A1-AS1 Gene

No ASD Table

Relevant External Links for ATP1A1-AS1 Gene

GeneLoc Exon Structure for
ATP1A1-AS1
ECgene alternative splicing isoforms for
ATP1A1-AS1

Expression for ATP1A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATP1A1-AS1 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ATP1A1-AS1 Gene



Evidence on tissue expression from TISSUES for ATP1A1-AS1 Gene

  • Thyroid gland(2)
genes like me logo Genes that share expression patterns with ATP1A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP1A1-AS1 Gene

Orthologs for ATP1A1-AS1 Gene

Evolution for ATP1A1-AS1 Gene

ENSEMBL:
Gene Tree for ATP1A1-AS1 (if available)
TreeFam:
Gene Tree for ATP1A1-AS1 (if available)

No data available for Orthologs for ATP1A1-AS1 Gene

Paralogs for ATP1A1-AS1 Gene

No data available for Paralogs for ATP1A1-AS1 Gene

Variants for ATP1A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP1A1-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1553192086 pathogenic, CHARCOT-MARIE-TOOTH DISEASE, AXONAL, TYPE 2DD 116,395,224(-) T/C genic_downstream_transcript_variant, intron_variant
rs1553192091 pathogenic, CHARCOT-MARIE-TOOTH DISEASE, AXONAL, TYPE 2DD 116,395,247(-) C/A/G genic_downstream_transcript_variant, intron_variant
rs1553192783 pathogenic, CHARCOT-MARIE-TOOTH DISEASE, AXONAL, TYPE 2DD 116,399,068(-) A/C genic_downstream_transcript_variant, intron_variant, non_coding_transcript_variant
rs781629728 pathogenic, HYPOMAGNESEMIA, SEIZURES, AND MENTAL RETARDATION 2 116,400,864(-) T/C/G genic_downstream_transcript_variant, intron_variant
rs1000067960 -- 116,393,809(-) G/A genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ATP1A1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv2533 CNV insertion 18451855

Additional Variant Information for ATP1A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP1A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP1A1-AS1 Gene

Disorders for ATP1A1-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for ATP1A1-AS1 Gene - From: GeneCards

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ATP1A1-AS1

genes like me logo Genes that share disorders with ATP1A1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ATP1A1-AS1 Gene

Publications for ATP1A1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 56
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 56
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 56

Products for ATP1A1-AS1 Gene

Sources for ATP1A1-AS1 Gene