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Aliases for ATP1A1-AS1 Gene

Subcategory (RNA class) for ATP1A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ATP1A1-AS1 Gene

  • ATP1A1 Antisense RNA 1 2 3 4 5
  • ATP1A1 Opposite Strand 2 3
  • ATP1A1OS 3 4
  • C1orf203 3 4
  • Chromosome 1 Open Reading Frame 203 2
  • ATP1A1 Antisense Gene Protein 1 4
  • ATP1A1 Opposite Strand Protein 4

External Ids for ATP1A1-AS1 Gene

Previous HGNC Symbols for ATP1A1-AS1 Gene

  • C1orf203
  • ATP1A1OS

Previous GeneCards Identifiers for ATP1A1-AS1 Gene

  • GC01M116934

Summaries for ATP1A1-AS1 Gene

GeneCards Summary for ATP1A1-AS1 Gene

ATP1A1-AS1 (ATP1A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ATP1A1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP1A1-AS1 Gene

Genomics for ATP1A1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ATP1A1-AS1 Gene

Promoters and enhancers for ATP1A1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J116417 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 660.7 +0.1 121 2.2 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 YBX1 ZNF2 ATP1A1-AS1 CD58 GC01M116414 RNU6-817P
GH01J116420 Enhancer 0.9 ENCODE 650.7 -2.0 -1972 0.2 PKNOX1 ATF1 FOXA2 ARNT NCOA2 TCF12 ZNF766 ATF7 NCOA1 MBD2 ATP1A1-AS1 ENSG00000230381
GH01J115641 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 31.2 +776.2 776236 2.4 HDGF PKNOX1 CLOCK ARNT SIN3A YBX1 DMAP1 ZNF2 ZNF766 ZNF213 VANGL1 SIKE1 ATP1A1-AS1 ENSG00000237993 NR1H5P ENSG00000207502 CD58 CASQ2
GH01J116877 Enhancer 1.5 FANTOM5 Ensembl ENCODE 39.5 -460.1 -460085 3.1 HDGF PKNOX1 ARNT SIN3A YBX1 FEZF1 ZNF2 ZNF213 ZNF416 ZNF143 MAN1A2 ATP1A1-AS1 ENSG00000237993 NEFHP1 LINC01525 VPS25P1 PTGFRN CD2 CD101 TRIM45
GH01J116471 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 29.6 -56.5 -56470 7.4 PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B FEZF1 DMAP1 YY1 ZNF766 ATP1A1-AS1 LINC01762 ATP1A1 ENSG00000200547
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ATP1A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATP1A1-AS1 Gene

Genomic Locations for ATP1A1-AS1 Gene
chr1:116,392,247-116,418,622
(GRCh38/hg38)
Size:
26,376 bases
Orientation:
Minus strand
chr1:116,934,869-116,961,244
(GRCh37/hg19)
Size:
26,376 bases
Orientation:
Minus strand

Genomic View for ATP1A1-AS1 Gene

Genes around ATP1A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP1A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP1A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP1A1-AS1 Gene

Proteins for ATP1A1-AS1 Gene

  • Protein details for ATP1A1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TC04-ATAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein ATP1A1-AS1
    Protein Accession:
    Q5TC04

    Protein attributes for ATP1A1-AS1 Gene

    Size:
    95 amino acids
    Molecular mass:
    10240 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ATP1A1-AS1 Gene

Post-translational modifications for ATP1A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP1A1-AS1 Gene

Domains & Families for ATP1A1-AS1 Gene

Protein Domains for ATP1A1-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for ATP1A1-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ATP1A1-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for ATP1A1-AS1 Gene

Function for ATP1A1-AS1 Gene

Phenotypes From GWAS Catalog for ATP1A1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP1A1-AS1 Gene

Localization for ATP1A1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ATP1A1-AS1 gene
Compartment Confidence
nucleus 2
cytosol 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP1A1-AS1 Gene

Pathways & Interactions for ATP1A1-AS1 Gene

SuperPathways for ATP1A1-AS1 Gene

No Data Available

Interacting Proteins for ATP1A1-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP1A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATP1A1-AS1 Gene

Drugs & Compounds for ATP1A1-AS1 Gene

No Compound Related Data Available

Transcripts for ATP1A1-AS1 Gene

mRNA/cDNA for ATP1A1-AS1 Gene

(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(7) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ATP1A1-AS1 Gene

No ASD Table

Relevant External Links for ATP1A1-AS1 Gene

GeneLoc Exon Structure for
ATP1A1-AS1
ECgene alternative splicing isoforms for
ATP1A1-AS1

Expression for ATP1A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATP1A1-AS1 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ATP1A1-AS1 Gene



Evidence on tissue expression from TISSUES for ATP1A1-AS1 Gene

  • Thyroid gland(2)
genes like me logo Genes that share expression patterns with ATP1A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP1A1-AS1 Gene

Orthologs for ATP1A1-AS1 Gene

Evolution for ATP1A1-AS1 Gene

ENSEMBL:
Gene Tree for ATP1A1-AS1 (if available)
TreeFam:
Gene Tree for ATP1A1-AS1 (if available)

No data available for Orthologs for ATP1A1-AS1 Gene

Paralogs for ATP1A1-AS1 Gene

No data available for Paralogs for ATP1A1-AS1 Gene

Variants for ATP1A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP1A1-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000067960 -- 116,393,809(-) G/A genic_downstream_transcript_variant, intron_variant
rs1000100320 -- 116,412,556(-) A/T intron_variant
rs1000220282 -- 116,413,969(-) A/T intron_variant
rs1000274622 -- 116,401,271(-) A/G genic_downstream_transcript_variant, intron_variant
rs1000322994 -- 116,419,694(-) T/C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ATP1A1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv2533 CNV insertion 18451855

Additional Variant Information for ATP1A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATP1A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP1A1-AS1 Gene

Disorders for ATP1A1-AS1 Gene

Additional Disease Information for ATP1A1-AS1

No disorders were found for ATP1A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP1A1-AS1 Gene

Publications for ATP1A1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58

Products for ATP1A1-AS1 Gene

Sources for ATP1A1-AS1 Gene

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