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Aliases for ATP13A4-AS1 Gene

Subcategory (RNA class) for ATP13A4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ATP13A4-AS1 Gene

  • ATP13A4 Antisense RNA 1 2 3 5
  • ATP13A4 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for ATP13A4-AS1 Gene

Previous GeneCards Identifiers for ATP13A4-AS1 Gene

  • GC00U932985
  • GC03P193272

Summaries for ATP13A4-AS1 Gene

GeneCards Summary for ATP13A4-AS1 Gene

ATP13A4-AS1 (ATP13A4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ATP13A4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATP13A4-AS1 Gene

Genomics for ATP13A4-AS1 Gene

GeneHancer (GH) Regulatory Elements for ATP13A4-AS1 Gene

Promoters and enhancers for ATP13A4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J193554 Promoter/Enhancer 0.7 EPDnew ENCODE 657 +1.7 1714 1.3 ATP13A4-AS1 ATP13A4 OPA1 EEF1A1P23
GH03J193489 Enhancer 0.5 FANTOM5 ENCODE 15.3 -62.4 -62437 3.5 ATP13A4 ATP13A4-AS1 ATP13A5
GH03J193465 Enhancer 0.4 ENCODE 6.8 -87.5 -87469 1.3 CREB1 ATF2 ATP13A4-AS1 ATP13A5 ATP13A4
GH03J193556 Enhancer 0.4 ENCODE 6.2 +3.8 3814 0.1 SP1 FOXA2 ATP13A4-AS1 EEF1A1P23 ATP13A4
GH03J193481 Enhancer 0.2 ENCODE 5.4 -71.6 -71566 0.2 ATP13A4-AS1 ATP13A5 ATP13A4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ATP13A4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATP13A4-AS1 Gene

Genomic Locations for ATP13A4-AS1 Gene
2,372 bases
Plus strand
1,876 bases
Plus strand

Genomic View for ATP13A4-AS1 Gene

Genes around ATP13A4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATP13A4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATP13A4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATP13A4-AS1 Gene

Proteins for ATP13A4-AS1 Gene

Post-translational modifications for ATP13A4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATP13A4-AS1 Gene

Domains & Families for ATP13A4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATP13A4-AS1 Gene

Function for ATP13A4-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATP13A4-AS1 Gene

Localization for ATP13A4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATP13A4-AS1 Gene

Pathways & Interactions for ATP13A4-AS1 Gene

SuperPathways for ATP13A4-AS1 Gene

No Data Available

Interacting Proteins for ATP13A4-AS1 Gene

Gene Ontology (GO) - Biological Process for ATP13A4-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ATP13A4-AS1 Gene

Drugs & Compounds for ATP13A4-AS1 Gene

No Compound Related Data Available

Transcripts for ATP13A4-AS1 Gene

mRNA/cDNA for ATP13A4-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ATP13A4-AS1 Gene

No ASD Table

Relevant External Links for ATP13A4-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ATP13A4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATP13A4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ATP13A4-AS1 Gene

This gene is overexpressed in Lung (x14.2) and Thyroid (x4.6).
genes like me logo Genes that share expression patterns with ATP13A4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATP13A4-AS1 Gene

Orthologs for ATP13A4-AS1 Gene

Evolution for ATP13A4-AS1 Gene

Gene Tree for ATP13A4-AS1 (if available)
Gene Tree for ATP13A4-AS1 (if available)

No data available for Orthologs for ATP13A4-AS1 Gene

Paralogs for ATP13A4-AS1 Gene

No data available for Paralogs for ATP13A4-AS1 Gene

Variants for ATP13A4-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATP13A4-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000654528 -- 193,555,774(+) T/A downstream_transcript_variant
rs1000725798 -- 193,554,506(+) T/G intron_variant, non_coding_transcript_variant
rs1001108822 -- 193,554,760(+) C/T intron_variant, non_coding_transcript_variant
rs1002223231 -- 193,555,633(+) C/G downstream_transcript_variant
rs1002820951 -- 193,553,109(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ATP13A4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759212 CNV gain 17122850
nsv1003505 CNV gain 25217958

Additional Variant Information for ATP13A4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATP13A4-AS1 Gene

Disorders for ATP13A4-AS1 Gene

Additional Disease Information for ATP13A4-AS1

No disorders were found for ATP13A4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATP13A4-AS1 Gene

Publications for ATP13A4-AS1 Gene

No publications were found for ATP13A4-AS1 Gene.

Products for ATP13A4-AS1 Gene

Sources for ATP13A4-AS1 Gene

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