Aliases for ATG3P1 Gene

Aliases for ATG3P1 Gene

  • Autophagy Related 3 Pseudogene 1 2 3 5
  • DJ54G6.1 2 3
  • ATG3 Autophagy Related 3 Homolog (S. Cerevisiae) Pseudogene 1 2
  • ATG3 Autophagy Related 3 Homolog (S. Cerevisiae) Pseudogene 2
  • ATG3 Autophagy Related 3 Homolog Pseudogene 1 3
  • ATG3P1 5
  • ATG3P 3
  • AGP3 3

External Ids for ATG3P1 Gene

Previous HGNC Symbols for ATG3P1 Gene

  • ATG3P

Previous GeneCards Identifiers for ATG3P1 Gene

  • GC20M037958
  • GC20M034695

Summaries for ATG3P1 Gene

GeneCards Summary for ATG3P1 Gene

ATG3P1 (Autophagy Related 3 Pseudogene 1) is a Pseudogene.

Additional gene information for ATG3P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ATG3P1 Gene

Genomics for ATG3P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ATG3P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J039338 Enhancer 0.6 Ensembl 0.4 -8.9 -8901 1 IKZF2 DPF2 RELB ELF1 USF2 IKZF1 NR2F1 SPI1 EBF1 ESRRA ATG3P1 RN7SL680P RF00017-3588 lnc-KIAA1755-14 DHX35
GH20J039342 Enhancer 0.6 Ensembl 0.4 -12.6 -12609 0.4 RELA TRIM22 TOE1 DPF2 RELB RAD51 USF2 EBF1 BHLHE40 IKZF1 RF00017-3588 lnc-KIAA1755-14 RN7SL680P ATG3P1 DHX35
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ATG3P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ATG3P1 Gene

Genomic Locations for ATG3P1 Gene
chr20:39,328,855-39,330,000
(GRCh38/hg38)
Size:
1,146 bases
Orientation:
Minus strand
chr20:37,957,498-37,958,643
(GRCh37/hg19)
Size:
1,146 bases
Orientation:
Minus strand

Genomic View for ATG3P1 Gene

Genes around ATG3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATG3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATG3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATG3P1 Gene

Proteins for ATG3P1 Gene

Post-translational modifications for ATG3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATG3P1 Gene

Domains & Families for ATG3P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ATG3P1 Gene

Function for ATG3P1 Gene

Phenotypes From GWAS Catalog for ATG3P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATG3P1 Gene

Localization for ATG3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATG3P1 Gene

Pathways & Interactions for ATG3P1 Gene

PathCards logo

SuperPathways for ATG3P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ATG3P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ATG3P1 Gene

Drugs & Compounds for ATG3P1 Gene

No Compound Related Data Available

Transcripts for ATG3P1 Gene

mRNA/cDNA for ATG3P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ATG3P1 Gene

No ASD Table

Relevant External Links for ATG3P1 Gene

GeneLoc Exon Structure for
ATG3P1

Expression for ATG3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ATG3P1 Gene

genes like me logo Genes that share expression patterns with ATG3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATG3P1 Gene

Orthologs for ATG3P1 Gene

Evolution for ATG3P1 Gene

ENSEMBL:
Gene Tree for ATG3P1 (if available)
TreeFam:
Gene Tree for ATG3P1 (if available)

No data available for Orthologs for ATG3P1 Gene

Paralogs for ATG3P1 Gene

No data available for Paralogs for ATG3P1 Gene

Variants for ATG3P1 Gene

Additional Variant Information for ATG3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATG3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ATG3P1 Gene

Disorders for ATG3P1 Gene

Additional Disease Information for ATG3P1

Genetic Association Database
(GAD)

No disorders were found for ATG3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATG3P1 Gene

Publications for ATG3P1 Gene

  1. A genome-wide association study identifies a locus on chromosome 14q21 as a predictor of leukocyte telomere length and as a marker of susceptibility for bladder cancer. (PMID: 21460395) Gu J … Wu X (Cancer prevention research (Philadelphia, Pa.) 2011) 41
  2. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin EJ … Vasan RS (BMC medical genetics 2007) 41
  3. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 41
  4. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 41

Products for ATG3P1 Gene

Sources for ATG3P1 Gene