Aliases for ATG101 Gene
Aliases for ATG101 Gene
External Ids for ATG101 Gene
- HGNC: 25679
- Entrez Gene: 60673
- Ensembl: ENSG00000123395
- OMIM: 615089
- UniProtKB: Q9BSB4
Previous HGNC Symbols for ATG101 Gene
- C12orf44
Previous GeneCards Identifiers for ATG101 Gene
- GC12P052464
Summaries for ATG101 Gene
GeneCards Summary for ATG101 Gene
ATG101 (Autophagy Related 101) is a Protein Coding gene. Among its related pathways are Autophagy Pathway and Longevity regulating pathway. Gene Ontology (GO) annotations related to this gene include identical protein binding.
UniProtKB/Swiss-Prot for ATG101 Gene
-
Autophagy factor required for autophagosome formation. Stabilizes ATG13, protecting it from proteasomal degradation.
Additional gene information for ATG101 Gene
No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATG101 Gene
Genomics for ATG101 Gene
GeneHancer (GH) Regulatory Elements for ATG101 Gene
Promoters and enhancers for ATG101 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around ATG101 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for ATG101 Gene
Genomic Locations for ATG101 Gene
- chr12:52,069,246-52,077,495
- (GRCh38/hg38)
- Size:
- 8,250 bases
- Orientation:
- Plus strand
- chr12:52,463,030-52,471,279
- (GRCh37/hg19)
- Size:
- 8,250 bases
- Orientation:
- Plus strand
Genomic View for ATG101 Gene
Genes around ATG101 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12q13.13 by Entrez Gene
- 12q13.13 by HGNC
- 12q13.13 by Ensembl
ATG101 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ATG101 Gene
Proteins for ATG101 Gene
-
Protein details for ATG101 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9BSB4-ATGA1_HUMAN
- Recommended name:
- Autophagy-related protein 101
- Protein Accession:
- Q9BSB4
- Q9HAE2
- Q9HBN1
Protein attributes for ATG101 Gene
- Size:
- 218 amino acids
- Molecular mass:
- 25003 Da
- Quaternary structure:
-
- Interacts with ATG13 (PubMed:19287211, PubMed:19597335, PubMed:26299944). Associates with a complex composed of ATG13, ULK1 and RB1CC1; the association with this complex requires the presence of ATG13 (PubMed:19287211, PubMed:19597335).
- SequenceCaution:
-
- Sequence=AAG17273.1; Type=Frameshift; Positions=110; Evidence={ECO:0000305};
Protein Expression for ATG101 Gene
Post-translational modifications for ATG101 Gene
Other Protein References for ATG101 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for ATG101
-
Abcam antibodies for ATG101
- Invitrogen Antibodies for ATG101 (AFLGC-ATG101)
- GeneTex ATG101 Antibody for ATG101
-
Custom Antibody ServicesProSci Antibodies for ATG101
Protein Products
-
OriGene Purified Proteins for ATG101
- Search Origene for MassSpec and Protein Over-expression Lysates for ATG101
- Origene Custom Protein Services for ATG101
- Search GeneTex for Proteins for ATG101
Assay Products
No data available for DME Specific Peptides for ATG101 Gene
Domains & Families for ATG101 Gene
Gene Families for ATG101 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Protein Domains for ATG101 Gene
- Blocks:
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for ATG101 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q9BSB4- Family:
-
- Belongs to the ATG101 family.
Function for ATG101 Gene
Molecular function for ATG101 Gene
- UniProtKB/Swiss-Prot Function:
- Autophagy factor required for autophagosome formation. Stabilizes ATG13, protecting it from proteasomal degradation.
Phenotypes From GWAS Catalog for ATG101 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005515 | protein binding | IPI | 19597335 |
| GO:0042802 | identical protein binding | IPI | 20562859 |
| GO:0044877 | protein-containing complex binding | IPI | 19597335 |
Phenotypes for ATG101 Gene
Animal Model Products
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-
CRISPR Products
-
OriGene CRISPR knockouts for ATG101
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- genomics-online: gRNA clones - Search results for available C12orf44 gene related products
- Applied Biological Materials CRISPR for ATG101
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for ATG101
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miRNA Products
Inhibitory RNA Products
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- genomics-online: shRNA clones - Search results for available C12orf44 gene related products
Clone Products
- Sino Biological Human cDNA Clone for ATG101
- Addgene plasmids for ATG101
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for ATG101
- genomics-online: cdna clones - Search results for available C12orf44 gene related products
- orf clones - Search results for available C12orf44 gene related products
- Applied Biological Materials Clones for ATG101
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
Horizon Cell Lines for ATG101
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATG101 Gene
Localization for ATG101 Gene
Subcellular locations from UniProtKB/Swiss-Prot for ATG101 Gene
- Cytoplasm. Preautophagosomal structure. Note=Under starvation conditions, it is localized to puncate structures primarily representing the isolation membrane; the isolation membrane sequesters a portion of the cytoplasm resulting in autophagosome formation. {ECO:0000269 PubMed:19597335}.
| Compartment | Confidence |
|---|---|
| cytosol | 5 |
| endoplasmic reticulum | 4 |
| lysosome | 2 |
| extracellular | 1 |
| mitochondrion | 1 |
| peroxisome | 1 |
| nucleus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000407 | phagophore assembly site | IDA,IEA | 19597335 |
| GO:0005737 | cytoplasm | IEA | -- |
| GO:0005789 | endoplasmic reticulum membrane | TAS | -- |
| GO:0005829 | cytosol | TAS | -- |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for ATG101 Gene
Pathways & Interactions for ATG101 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Autophagy Pathway |
.34
|
|
| 2 | Autophagy - animal | ||
| 3 | Longevity regulating pathway | ||
| 4 | Cellular Senescence (REACTOME) | ||
Pathways by source for ATG101 Gene
1 GeneTex pathway for ATG101 Gene
2 Reactome pathways for ATG101 Gene
3 KEGG pathways for ATG101 Gene
Interacting Proteins for ATG101 Gene
Selected Interacting proteins:
Q9BSB4-ATGA1_HUMAN
ENSP00000338990
for ATG101 Gene via
UniProtKB
STRING
IID
MINT
GPS-Prot Interaction Network for ATG101
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000045 | autophagosome assembly | IMP | 19597335 |
| GO:0006914 | autophagy | IEA | -- |
| GO:0016236 | macroautophagy | TAS | -- |
| GO:0016241 | regulation of macroautophagy | TAS | -- |
Transcripts for ATG101 Gene
mRNA/cDNA for ATG101 Gene
- (3) REFSEQ mRNAs :
- (235) Selected AceView cDNA sequences:
- (7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000547409 759 bps (uc058ofw.1)
- ENST00000336854 1439 bps (uc001rzu.5)
- ENST00000552544 837 bps (uc058ofx.1)
- ENST00000550604 671 bps (uc058ofy.1)
- ENST00000553049 846 bps (uc058ofz.1)
CRISPR Products
-
OriGene CRISPR knockouts for ATG101
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for ATG101
- genomics-online: gRNA clones - Search results for available C12orf44 gene related products
- Applied Biological Materials CRISPR for ATG101
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for ATG101
- GenScript: Design CRISPR guide RNA sequences for ATG101
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for ATG101
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- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ATG101
- genomics-online: shRNA clones - Search results for available C12orf44 gene related products
Clone Products
- Sino Biological Human cDNA Clone for ATG101
- Addgene plasmids for ATG101
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for ATG101
- genomics-online: cdna clones - Search results for available C12orf44 gene related products
- orf clones - Search results for available C12orf44 gene related products
- Applied Biological Materials Clones for ATG101
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4a | · | 4b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | ||||||||||||||||||
| SP2: | - | - | |||||||||||||||||
| SP3: | - | ||||||||||||||||||
| SP4: |
Expression for ATG101 Gene
This gene is overexpressed in Brain (17.8), Peripheral blood mononuclear cells (13.5), and Frontal cortex (7.6).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for ATG101 Gene
NURSA nuclear receptor signaling pathways regulating expression of ATG101 Gene:
ATG101Evidence on tissue expression from TISSUES for ATG101 Gene
- Nervous system(4.4)
- Lung(2.2)
- Stomach(2.2)
Primer Products
-
OriGene qPCR primer pairs for ATG101
-
OriGene qPCR primer pairs and template standards for ATG101
- genomics-online: primer clones - Search results for available C12orf44 gene related products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATG101 Gene
Orthologs for ATG101 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | C12orf44 34 |
|
OneToOne | |
| C12H12orf44 33 |
|
||||
| cow (Bos Taurus) |
Mammalia | ATG101 34 |
|
OneToOne | |
| C5H12orf44 33 |
|
||||
| dog (Canis familiaris) |
Mammalia | C12ORF44 34 |
|
OneToOne | |
| C27H12orf44 33 |
|
||||
| rat (Rattus norvegicus) |
Mammalia | RGD1359310 33 |
|
||
| mouse (Mus musculus) |
Mammalia | 9430023L20Rik 34 33 |
|
OneToOne | |
| Atg101 16 |
|
||||
| lizard (Anolis carolinensis) |
Reptilia | C12orf44 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | c12orf44 33 |
|
||
| African clawed frog (Xenopus laevis) |
Amphibia | Xl.11635 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | C10H12orf44 34 |
|
OneToOne | |
| atg101 33 |
|
||||
| Dr.12242 33 |
|
||||
| rainbow trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.8586 33 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | CG7053 34 33 |
|
OneToOne | |
| worm (Caenorhabditis elegans) |
Secernentea | CELE_Y69A2AR.7 33 |
|
||
| epg-9 34 |
|
OneToOne | |||
| sea squirt (Ciona savignyi) |
Ascidiacea | CSA.9278 34 |
|
OneToOne | |
| Cin.11146 33 |
|
||||
| sea squirt (Ciona intestinalis) |
Ascidiacea | Cin.11146 33 |
|
- Species where no ortholog for ATG101 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Evolution for ATG101 Gene
- ENSEMBL:
- Gene Tree for ATG101 (if available)
- TreeFam:
- Gene Tree for ATG101 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for ATG101: view image
Paralogs for ATG101 Gene
(1) SIMAP similar genes for ATG101 Gene using alignment to 1 proteins:
- ATGA1_HUMAN
No data available for Paralogs for ATG101 Gene
Variants for ATG101 Gene
| SNP ID | Clin | Chr 12 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1001053778 | -- | 52,071,738(+) | C/T | intron_variant | |
| rs1001149777 | -- | 52,072,006(+) | C/T | intron_variant | |
| rs1001155595 | -- | 52,070,202(+) | C/T | 5_prime_UTR_variant, intron_variant | |
| rs1001268854 | -- | 52,076,061(+) | T/C | intron_variant | |
| rs1001704666 | -- | 52,068,948(+) | G/A | upstream_transcript_variant |
Residual Variation Intolerance Score:
26.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.31;
6.81% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for ATG101 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ATG101
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ATG101 Gene
Disorders for ATG101 Gene
Additional Disease Information for ATG101
No disorders were found for ATG101 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATG101 Gene
Publications for ATG101 Gene
- Atg101, a novel mammalian autophagy protein interacting with Atg13. (PMID: 19597335) Hosokawa N … Mizushima N (Autophagy 2009) 2 3 4 58
- A novel, human Atg13 binding protein, Atg101, interacts with ULK1 and is essential for macroautophagy. (PMID: 19287211) Mercer CA … Dennis PB (Autophagy 2009) 2 3 4 58
- Structure of the Human Atg13-Atg101 HORMA Heterodimer: an Interaction Hub within the ULK1 Complex. (PMID: 26299944) Qi S … Hurley JH (Structure (London, England : 1993) 2015) 3 4 58
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
- Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
Products for ATG101 Gene
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- antibodies-online: Search results for 20 available C12orf44 Antibodies ranked by validation data
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- Quality Products:
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- genomics-online: cdna clones - Search results for available C12orf44 gene related products
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- genomics-online: gRNA clones - Search results for available C12orf44 gene related products
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- genomics-online: shRNA clones - Search results for available C12orf44 gene related products
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for ATG101
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Sources for ATG101 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
- (159) GlyConnect
- (160) Aminode
- (161) GeneCopoeia
- (162) GPS-Prot
- (163) RNACentral
- (164) LncRNADisease
- (165) LOVD
- (166) miR2Disease
- (167) DiseaseEnhancer
- (168) Boster Bio
- (169) Biorbyt