Aliases for ATG101 Gene
Aliases for ATG101 Gene
External Ids for ATG101 Gene
- HGNC: 25679
- Entrez Gene: 60673
- Ensembl: ENSG00000123395
- OMIM: 615089
- UniProtKB: Q9BSB4
Previous HGNC Symbols for ATG101 Gene
- C12orf44
Previous GeneCards Identifiers for ATG101 Gene
- GC12P052464
Summaries for ATG101 Gene
GeneCards Summary for ATG101 Gene
ATG101 (Autophagy Related 101) is a Protein Coding gene. Among its related pathways are Longevity regulating pathway and Autophagy Pathway. Gene Ontology (GO) annotations related to this gene include identical protein binding and protein complex binding.
UniProtKB/Swiss-Prot for ATG101 Gene
-
Autophagy factor required for autophagosome formation. Stabilizes ATG13, protecting it from proteasomal degradation.
Additional gene information for ATG101 Gene
No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATG101 Gene
Genomics for ATG101 Gene
GeneHancer (GH) Regulatory Elements for ATG101 Gene
Promoters and enhancers for ATG101 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around ATG101 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for ATG101 Gene
Genomic Locations for ATG101 Gene
- chr12:52,069,246-52,077,495
- (GRCh38/hg38)
- Size:
- 8,250 bases
- Orientation:
- Plus strand
- chr12:52,463,030-52,471,279
- (GRCh37/hg19)
Genomic View for ATG101 Gene
Genes around ATG101 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12q13.13 by Ensembl
- 12q13.13 by Entrez Gene
- 12q13.13 by HGNC
ATG101 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ATG101 Gene
Proteins for ATG101 Gene
-
Protein details for ATG101 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9BSB4-ATGA1_HUMAN
- Recommended name:
- Autophagy-related protein 101
- Protein Accession:
- Q9BSB4
- Q9HAE2
- Q9HBN1
Protein attributes for ATG101 Gene
- Size:
- 218 amino acids
- Molecular mass:
- 25003 Da
- Quaternary structure:
-
- Interacts with ATG13 (PubMed:19287211, PubMed:19597335, PubMed:26299944). Associates with a complex composed of ATG13, ULK1 and RB1CC1; the association with this complex requires the presence of ATG13 (PubMed:19287211, PubMed:19597335).
- SequenceCaution:
-
- Sequence=AAG17273.1; Type=Frameshift; Positions=110; Evidence={ECO:0000305};
Protein Expression for ATG101 Gene
Post-translational modifications for ATG101 Gene
Other Protein References for ATG101 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for ATG101
-
Abcam antibodies for ATG101
- Invitrogen Antibodies for ATG101
- GeneTex ATG101 antibody for ATG101
-
Custom Antibody ServicesProSci Antibodies for ATG101
Protein Products
-
OriGene Purified Proteins for ATG101
- Search Origene for MassSpec and Protein Over-expression Lysates for ATG101
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- Search GeneTex for Proteins for ATG101
Assay Products
No data available for DME Specific Peptides for ATG101 Gene
Domains & Families for ATG101 Gene
Gene Families for ATG101 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Protein Domains for ATG101 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for ATG101 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q9BSB4- Family:
-
- Belongs to the ATG101 family.
Function for ATG101 Gene
Molecular function for ATG101 Gene
- UniProtKB/Swiss-Prot Function:
- Autophagy factor required for autophagosome formation. Stabilizes ATG13, protecting it from proteasomal degradation.
Phenotypes From GWAS Catalog for ATG101 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005515 | protein binding | IPI | 19597335 |
| GO:0032403 | protein complex binding | IPI | 19597335 |
| GO:0042802 | identical protein binding | IPI | 20562859 |
Phenotypes for ATG101 Gene
Animal Model Products
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-
-
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-
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CRISPR Products
-
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- genomics-online: gRNA clones - Search results for available C12orf44 gene related products
- Applied Biological Materials CRISPR for ATG101
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for ATG101
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- Search ViGene Biosciences for ATG101
Inhibitory RNA Products
- Origene RNAi, sirna, and shrna products in human, mouse, rat for ATG101
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- genomics-online: shRNA clones - Search results for available C12orf44 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for ATG101 gene
Clone Products
- VectorBuilder custom plasmid, inducible vectors for ATG101
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ATG101
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for ATG101
- genomics-online: cdna clones - Search results for available C12orf44 gene related products
- orf clones - Search results for available C12orf44 gene related products
- Applied Biological Materials Clones for ATG101
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
Horizon Cell Lines for ATG101
-
ViGene Biosciences adenoviral particle packaged cDNA for ATG101 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for ATG101 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for ATG101 gene
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATG101 Gene
Localization for ATG101 Gene
Subcellular locations from UniProtKB/Swiss-Prot for ATG101 Gene
- Cytoplasm. Preautophagosomal structure. Note=Under starvation conditions, it is localized to puncate structures primarily representing the isolation membrane; the isolation membrane sequesters a portion of the cytoplasm resulting in autophagosome formation. {ECO:0000269 PubMed:19597335}.
| Compartment | Confidence |
|---|---|
| cytosol | 5 |
| endoplasmic reticulum | 4 |
| lysosome | 2 |
| extracellular | 1 |
| mitochondrion | 1 |
| peroxisome | 1 |
| nucleus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000407 | phagophore assembly site | IEA,IDA | 19597335 |
| GO:0005737 | cytoplasm | IEA | -- |
| GO:0005789 | endoplasmic reticulum membrane | TAS | -- |
| GO:0005829 | cytosol | TAS | -- |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for ATG101 Gene
Pathways & Interactions for ATG101 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Autophagy Pathway |
.34
|
|
| 2 | Autophagy - animal | ||
| 3 | Longevity regulating pathway | ||
| 4 | Cellular Senescence (REACTOME) | ||
Pathways by source for ATG101 Gene
1 GeneTex pathway for ATG101 Gene
2 Reactome pathways for ATG101 Gene
3 KEGG pathways for ATG101 Gene
Interacting Proteins for ATG101 Gene
Selected Interacting proteins:
Q9BSB4-ATGA1_HUMAN
ENSP00000338990
for ATG101 Gene via
IID
STRING
UniProtKB
MINT
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000045 | autophagosome assembly | IMP | 19597335 |
| GO:0006914 | autophagy | IEA | -- |
| GO:0016236 | macroautophagy | TAS | -- |
| GO:0016241 | regulation of macroautophagy | TAS | -- |
Transcripts for ATG101 Gene
mRNA/cDNA for ATG101 Gene
- (2) REFSEQ mRNAs :
- (235) Selected AceView cDNA sequences:
- (7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
-
OriGene CRISPR knockouts for ATG101
- genomics-online: gRNA clones - Search results for available C12orf44 gene related products
- Applied Biological Materials CRISPR for ATG101
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for ATG101
- GenScript: Design CRISPR guide RNA sequences for ATG101
miRNA Products
- Search ViGene Biosciences for ATG101
Inhibitory RNA Products
- Origene RNAi, sirna, and shrna products in human, mouse, rat for ATG101
- Browse OriGene Inhibitory RNA Products For ATG101
- genomics-online: shRNA clones - Search results for available C12orf44 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for ATG101 gene
Clone Products
- VectorBuilder custom plasmid, inducible vectors for ATG101
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ATG101
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for ATG101
- genomics-online: cdna clones - Search results for available C12orf44 gene related products
- orf clones - Search results for available C12orf44 gene related products
- Applied Biological Materials Clones for ATG101
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4a | · | 4b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | ||||||||||||||||||
| SP2: | - | - | |||||||||||||||||
| SP3: | - | ||||||||||||||||||
| SP4: |
Expression for ATG101 Gene
This gene is overexpressed in Brain (17.8), Peripheral blood mononuclear cells (13.5), and Frontal cortex (7.6).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ATG101 Gene
NURSA nuclear receptor signaling pathways regulating expression of ATG101 Gene:
ATG101Evidence on tissue expression from TISSUES for ATG101 Gene
- Nervous system(4.4)
- Lung(2.2)
- Stomach(2.2)
Primer Products
-
OriGene qPCR primer pairs for ATG101
-
OriGene qPCR primer pairs and template standards for ATG101
- genomics-online: primer clones - Search results for available C12orf44 gene related products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATG101 Gene
Orthologs for ATG101 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | C12orf44 34 |
|
OneToOne | |
| C12H12orf44 33 |
|
||||
| cow (Bos Taurus) |
Mammalia | ATG101 34 |
|
OneToOne | |
| C5H12orf44 33 |
|
||||
| dog (Canis familiaris) |
Mammalia | C12ORF44 34 |
|
OneToOne | |
| C27H12orf44 33 |
|
||||
| rat (Rattus norvegicus) |
Mammalia | RGD1359310 33 |
|
||
| mouse (Mus musculus) |
Mammalia | 9430023L20Rik 33 34 |
|
||
| Atg101 16 |
|
||||
| lizard (Anolis carolinensis) |
Reptilia | C12orf44 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | c12orf44 33 |
|
||
| African clawed frog (Xenopus laevis) |
Amphibia | Xl.11635 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | C10H12orf44 34 |
|
OneToOne | |
| atg101 33 |
|
||||
| Dr.12242 33 |
|
||||
| rainbow trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.8586 33 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | CG7053 33 34 |
|
||
| worm (Caenorhabditis elegans) |
Secernentea | CELE_Y69A2AR.7 33 |
|
||
| epg-9 34 |
|
OneToOne | |||
| sea squirt (Ciona savignyi) |
Ascidiacea | CSA.9278 34 |
|
OneToOne | |
| sea squirt (Ciona intestinalis) |
Ascidiacea | Cin.11146 33 |
|
- Species where no ortholog for ATG101 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for ATG101 Gene
(1) SIMAP similar genes for ATG101 Gene using alignment to 1 proteins:
No data available for Paralogs for ATG101 Gene
Variants for ATG101 Gene
| SNP ID | Clin | Chr 12 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1001053778 | -- | 52,071,738(+) | C/T | intron_variant | |
| rs1001149777 | -- | 52,072,006(+) | C/T | intron_variant | |
| rs1001155595 | -- | 52,070,202(+) | C/T | 5_prime_UTR_variant, intron_variant | |
| rs1001268854 | -- | 52,076,061(+) | T/C | intron_variant | |
| rs1001704666 | -- | 52,068,948(+) | G/A | upstream_transcript_variant |
Residual Variation Intolerance Score:
26.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.31;
6.81% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for ATG101 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ATG101
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ATG101 Gene
Disorders for ATG101 Gene
Additional Disease Information for ATG101
No disorders were found for ATG101 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATG101 Gene
Publications for ATG101 Gene
- A novel, human Atg13 binding protein, Atg101, interacts with ULK1 and is essential for macroautophagy. (PMID: 19287211) Mercer CA … Dennis PB (Autophagy 2009) 2 3 4 58
- Atg101, a novel mammalian autophagy protein interacting with Atg13. (PMID: 19597335) Hosokawa N … Mizushima N (Autophagy 2009) 2 3 4 58
- Structure of the Human Atg13-Atg101 HORMA Heterodimer: an Interaction Hub within the ULK1 Complex. (PMID: 26299944) Qi S … Hurley JH (Structure (London, England : 1993) 2015) 3 4 58
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
- Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
Products for ATG101 Gene
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- Cyagen custom Knockout/knockin (KOKI) mouse models for ATG101
- VectorBuilder custom plasmid, inducible vectors for ATG101
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ATG101
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for ATG101
- antibodies-online: Search results for 20 available C12orf44 Antibodies ranked by validation data
- Compare Top C12orf44 Antibodies
- antibodies-online: Search results for available C12orf44 related products ranked by validation data
- antibodies-online: Search results for 7 available C12orf44 Proteins ranked by validation data
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- Quality Products:
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- Search ViGene Biosciences for ATG101
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- Search for ATG101 Proteins at ProSci
- Horizon Cell Lines for ATG101
- genomics-online: cdna clones - Search results for available C12orf44 gene related products
- orf clones - Search results for available C12orf44 gene related products
- genomics-online: gRNA clones - Search results for available C12orf44 gene related products
- genomics-online: primer clones - Search results for available C12orf44 gene related products
- genomics-online: shRNA clones - Search results for available C12orf44 gene related products
Sources for ATG101 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
