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Aliases for ATG10-IT1 Gene

Subcategory (RNA class) for ATG10-IT1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for ATG10-IT1 Gene

  • ATG10 Intronic Transcript 1 2 3 5
  • ATG10 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ATG10-IT1 Gene

ORGUL Members for ATG10-IT1 Gene

Previous GeneCards Identifiers for ATG10-IT1 Gene

  • GC00U933538
  • GC05P081288

Summaries for ATG10-IT1 Gene

GeneCards Summary for ATG10-IT1 Gene

ATG10-IT1 (ATG10 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ATG10-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATG10-IT1 Gene

Genomics for ATG10-IT1 Gene

GeneHancer (GH) Regulatory Elements for ATG10-IT1 Gene

Promoters and enhancers for ATG10-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I081979 Enhancer 0.5 ENCODE 0.4 -11.4 -11385 1.3 SCRT1 POLR2A SCRT2 POU5F1 RFX5 ETS1 ATG10 ATG10-AS1 ATP6AP1L ATG10-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ATG10-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATG10-IT1 Gene

Genomic Locations for ATG10-IT1 Gene
chr5:81,991,995-81,992,481
(GRCh38/hg38)
Size:
487 bases
Orientation:
Plus strand
chr5:81,287,814-81,288,300
(GRCh37/hg19)

Genomic View for ATG10-IT1 Gene

Genes around ATG10-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATG10-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATG10-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ATG10-IT1 Gene

Proteins for ATG10-IT1 Gene

Post-translational modifications for ATG10-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATG10-IT1 Gene

Domains & Families for ATG10-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ATG10-IT1 Gene

Function for ATG10-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATG10-IT1 Gene

Localization for ATG10-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATG10-IT1 Gene

Pathways & Interactions for ATG10-IT1 Gene

SuperPathways for ATG10-IT1 Gene

No Data Available

Interacting Proteins for ATG10-IT1 Gene

Gene Ontology (GO) - Biological Process for ATG10-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATG10-IT1 Gene

Drugs & Compounds for ATG10-IT1 Gene

No Compound Related Data Available

Transcripts for ATG10-IT1 Gene

mRNA/cDNA for ATG10-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ATG10-IT1 Gene

No ASD Table

Relevant External Links for ATG10-IT1 Gene

GeneLoc Exon Structure for
ATG10-IT1
ECgene alternative splicing isoforms for
ATG10-IT1

Expression for ATG10-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATG10-IT1 Gene

genes like me logo Genes that share expression patterns with ATG10-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATG10-IT1 Gene

Orthologs for ATG10-IT1 Gene

Evolution for ATG10-IT1 Gene

ENSEMBL:
Gene Tree for ATG10-IT1 (if available)
TreeFam:
Gene Tree for ATG10-IT1 (if available)

No data available for Orthologs for ATG10-IT1 Gene

Paralogs for ATG10-IT1 Gene

No data available for Paralogs for ATG10-IT1 Gene

Variants for ATG10-IT1 Gene

Additional Variant Information for ATG10-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATG10-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ATG10-IT1 Gene

Disorders for ATG10-IT1 Gene

No disorders were found for ATG10-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ATG10-IT1 Gene

Publications for ATG10-IT1 Gene

No publications were found for ATG10-IT1 Gene.

Products for ATG10-IT1 Gene

Sources for ATG10-IT1 Gene

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