Aliases for ATE1-AS1 Gene

Subcategory (RNA class) for ATE1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ATE1-AS1 Gene

  • ATE1 Antisense RNA 1 2 3 5
  • ATE1 Antisense RNA 1 (Head To Head) 3
  • NONHSAG007058 92
  • HSALNG0081171 167
  • Lnc-TACC2-10 168
  • ATE1-AS1 2

External Ids for ATE1-AS1 Gene

Previous GeneCards Identifiers for ATE1-AS1 Gene

  • GC10P123688

Summaries for ATE1-AS1 Gene

GeneCards Summary for ATE1-AS1 Gene

ATE1-AS1 (ATE1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ATE1-AS1 Gene

  • ZNRD1 antisense RNA 1 conserved region 2

Additional gene information for ATE1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ATE1-AS1 Gene

Genomics for ATE1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ATE1-AS1 Gene

Promoters and enhancers for ATE1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J121926 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 556.3 +0.6 614 5.2 HNRNPK ZBTB40 ZNF217 EP300 TCF12 SIN3A MYC POLR2G GTF2E2 PHF8 ATE1-AS1 ATE1 NSMCE4A lnc-TACC2-9
GH10J121993 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 16.8 +67.0 66964 3.3 CTBP1 ESRRA CTCF GATA3 FOXA1 PKNOX1 DPF2 MAZ RXRA GLIS1 TACC2 ATE1-AS1 NSMCE4A piR-38580-047
GH10J121973 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 11 +46.8 46809 3.2 CTCF TCF12 SIN3A NRF1 POLR2G SP1 PHF8 ZFX ZIC2 POLR2A NSMCE4A lnc-ATE1-5 ATE1-AS1 ENSG00000273891
GH10J121935 Enhancer 1 Ensembl ENCODE 17 +7.8 7829 1.6 TCF12 NRF1 POLR2G NCOR1 KDM6A TCF7 TGIF2 SKI TEAD1 ZBTB26 ATE1-AS1 ATE1 lnc-TACC2-9 lnc-ATE1-1
GH10J121900 Enhancer 0.8 Ensembl ENCODE 20.3 -27.5 -27460 0.5 CTCF USF1 TRIM28 REST RAD21 TRIM22 SMC3 RB1 ZNF654 ZNF843 lnc-NSMCE4A-4 ATE1-AS1 ATE1 NSMCE4A KR153194-024
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ATE1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATE1-AS1 Gene

Genomic Locations for ATE1-AS1 Gene
chr10:121,928,191-121,952,788
(GRCh38/hg38)
Size:
24,598 bases
Orientation:
Plus strand
chr10:123,687,827-123,711,480
(GRCh37/hg19)
Size:
23,654 bases
Orientation:
Plus strand

Genomic View for ATE1-AS1 Gene

Genes around ATE1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATE1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATE1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATE1-AS1 Gene

Proteins for ATE1-AS1 Gene

Post-translational modifications for ATE1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ATE1-AS1 Gene

Domains & Families for ATE1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ATE1-AS1 Gene

Function for ATE1-AS1 Gene

Phenotypes From GWAS Catalog for ATE1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATE1-AS1 Gene

Localization for ATE1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATE1-AS1 Gene

Pathways & Interactions for ATE1-AS1 Gene

PathCards logo

SuperPathways for ATE1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ATE1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ATE1-AS1 Gene

Drugs & Compounds for ATE1-AS1 Gene

No Compound Related Data Available

Transcripts for ATE1-AS1 Gene

mRNA/cDNA for ATE1-AS1 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
3 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ATE1-AS1 Gene

No ASD Table

Relevant External Links for ATE1-AS1 Gene

GeneLoc Exon Structure for
ATE1-AS1

Expression for ATE1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ATE1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ATE1-AS1

genes like me logo Genes that share expression patterns with ATE1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATE1-AS1 Gene

Orthologs for ATE1-AS1 Gene

Evolution for ATE1-AS1 Gene

ENSEMBL:
Gene Tree for ATE1-AS1 (if available)
TreeFam:
Gene Tree for ATE1-AS1 (if available)

No data available for Orthologs for ATE1-AS1 Gene

Paralogs for ATE1-AS1 Gene

No data available for Paralogs for ATE1-AS1 Gene

Variants for ATE1-AS1 Gene

Additional dbSNP identifiers (rs#s) for ATE1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ATE1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3814 CNV loss 18987735

Additional Variant Information for ATE1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATE1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ATE1-AS1 Gene

Disorders for ATE1-AS1 Gene

Additional Disease Information for ATE1-AS1

No disorders were found for ATE1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATE1-AS1 Gene

Publications for ATE1-AS1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 54

Products for ATE1-AS1 Gene

Sources for ATE1-AS1 Gene