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Aliases for ATE1-AS1 Gene

Subcategory (RNA class) for ATE1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ATE1-AS1 Gene

  • ATE1 Antisense RNA 1 2 3 5
  • ATE1 Antisense RNA 1 (Head To Head) 3

External Ids for ATE1-AS1 Gene

Previous GeneCards Identifiers for ATE1-AS1 Gene

  • GC10P123688

Summaries for ATE1-AS1 Gene

GeneCards Summary for ATE1-AS1 Gene

ATE1-AS1 (ATE1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ATE1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ATE1-AS1 Gene

Genomics for ATE1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ATE1-AS1 Gene

Promoters and enhancers for ATE1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J121926 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 706.3 +0.5 493 5.2 HDGF PKNOX1 FOXA2 ARNT SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 ATE1-AS1 ATE1 GC10M121925 ENSG00000224250 RPL19P16 LINC01153 FAM24A NSMCE4A C10orf120 GC10P121933
GH10J121993 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 16.7 +66.8 66843 3.3 CTCF PKNOX1 ESRRA CTBP1 GATA3 SMARCE1 MAZ ZNF687 RXRA HLF TACC2 ATE1-AS1 NSMCE4A PIR33240
GH10J121973 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11 +46.6 46597 1.9 ATF1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 GLIS2 ZNF207 NSMCE4A ATE1-AS1 ENSG00000273891
GH10J121935 Enhancer 0.9 ENCODE 17 +7.7 7724 1.6 FOXA2 ARID4B DMAP1 ZNF48 ETS1 YY1 ZNF121 RXRA REST PPARG ATE1-AS1 ATE1 GC10P121933 GC10M121942
GH10J122012 Enhancer 0.9 ENCODE dbSUPER 14.2 +85.1 85091 1.5 FOXA2 SAP130 ZNF644 ZNF48 RAD21 YY1 HNF4G NR2F6 HOMEZ TFE3 ATE1-AS1 NSMCE4A PIR33240 TACC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ATE1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ATE1-AS1 Gene

Genomic Locations for ATE1-AS1 Gene
chr10:121,928,312-121,951,965
(GRCh38/hg38)
Size:
23,654 bases
Orientation:
Plus strand
chr10:123,687,827-123,711,480
(GRCh37/hg19)

Genomic View for ATE1-AS1 Gene

Genes around ATE1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ATE1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ATE1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ATE1-AS1 Gene

Function for ATE1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ATE1-AS1 Gene

Localization for ATE1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ATE1-AS1 Gene

Pathways & Interactions for ATE1-AS1 Gene

SuperPathways for ATE1-AS1 Gene

No Data Available

Interacting Proteins for ATE1-AS1 Gene

Gene Ontology (GO) - Biological Process for ATE1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ATE1-AS1 Gene

Drugs & Compounds for ATE1-AS1 Gene

No Compound Related Data Available

Transcripts for ATE1-AS1 Gene

mRNA/cDNA for ATE1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ATE1-AS1 Gene

No ASD Table

Relevant External Links for ATE1-AS1 Gene

GeneLoc Exon Structure for
ATE1-AS1
ECgene alternative splicing isoforms for
ATE1-AS1

Expression for ATE1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ATE1-AS1 Gene

genes like me logo Genes that share expression patterns with ATE1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ATE1-AS1 Gene

Orthologs for ATE1-AS1 Gene

Evolution for ATE1-AS1 Gene

ENSEMBL:
Gene Tree for ATE1-AS1 (if available)
TreeFam:
Gene Tree for ATE1-AS1 (if available)

No data available for Orthologs for ATE1-AS1 Gene

Paralogs for ATE1-AS1 Gene

No data available for Paralogs for ATE1-AS1 Gene

Variants for ATE1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ATE1-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000000811 -- 121,939,576(+) A/G intron_variant
rs1000366794 -- 121,928,273(+) GCCTGCC/GCC upstream_transcript_variant
rs1000423617 -- 121,952,454(+) T/G downstream_transcript_variant
rs1000592235 -- 121,929,616(+) A/G intron_variant
rs1000667498 -- 121,941,859(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ATE1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3814 CNV loss 18987735

Additional Variant Information for ATE1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ATE1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ATE1-AS1 Gene

Disorders for ATE1-AS1 Gene

Additional Disease Information for ATE1-AS1

No disorders were found for ATE1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ATE1-AS1 Gene

Publications for ATE1-AS1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 58

Products for ATE1-AS1 Gene

Sources for ATE1-AS1 Gene

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