Aliases for ASIC4-AS1 Gene

Subcategory (RNA class) for ASIC4-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ASIC4-AS1 Gene

  • ASIC4 Antisense RNA 1 2 3 5
  • ASIC4-AS1 2 5
  • NONHSAG030588.2 91
  • Lnc-CHPF-1 165

External Ids for ASIC4-AS1 Gene

Summaries for ASIC4-AS1 Gene

GeneCards Summary for ASIC4-AS1 Gene

ASIC4-AS1 (ASIC4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ASIC4-AS1 include Myopathy, Centronuclear, 5.

Additional gene information for ASIC4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ASIC4-AS1 Gene

Genomics for ASIC4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ASIC4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J219518 Enhancer 0.5 Ensembl 600.7 -0.8 -815 1 ZNF692 ZNF316 ZKSCAN1 TRIM28 ZFP69B ASIC4-AS1 ASIC4 TMEM198
GH02J219517 Enhancer 0.3 Ensembl 600.7 +0.2 185 0.6 IKZF1 KLF9 ASIC4-AS1 ASIC4 TMEM198
GH02J219457 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 12 +57.2 57239 4.5 CTCF IKZF1 NFKBIZ PRDM1 ZNF143 ZIC2 REST RAD21 BRD9 TRIM22 SPEG GMPPA ASIC4 ASIC4-AS1 DES OBSL1 PTPRN lnc-DES-2 ENSG00000286143
GH02J219438 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.3 +73.8 73763 9.5 PRDM10 RFX1 ZIC2 PKNOX1 POLR2A ZNF501 EZH2 ZNF600 ZNF341 NRF1 STK36 CNOT9 ASIC4 GMPPA DES ASIC4-AS1 RNF25 BCS1L STK11IP ZNF142
GH02J219450 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.9 +64.4 64402 4.5 PRDM10 ZNF692 JUND PATZ1 ZNF600 MGA CEBPB NFE2 CHD2 JUN GMPPA ASIC4 ASIC4-AS1 DES PTPRN lnc-DES-2 SPEG ENSG00000286143
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ASIC4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ASIC4-AS1 Gene

Genomic Locations for ASIC4-AS1 Gene
chr2:219,481,732-219,517,086
(GRCh38/hg38)
Size:
35,355 bases
Orientation:
Minus strand
chr2:220,346,795-220,381,599
(GRCh37/hg19)
Size:
34,805 bases
Orientation:
Minus strand

Genomic View for ASIC4-AS1 Gene

Genes around ASIC4-AS1 on UCSC Golden Path with GeneCards custom track
ASIC4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ASIC4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ASIC4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ASIC4-AS1 Gene

Proteins for ASIC4-AS1 Gene

Post-translational modifications for ASIC4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ASIC4-AS1 Gene

Domains & Families for ASIC4-AS1 Gene

Gene Families for ASIC4-AS1 Gene

genes like me logo Genes that share domains with ASIC4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ASIC4-AS1 Gene

Function for ASIC4-AS1 Gene

Phenotypes From GWAS Catalog for ASIC4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ASIC4-AS1 Gene

Localization for ASIC4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ASIC4-AS1 Gene

Pathways & Interactions for ASIC4-AS1 Gene

PathCards logo

SuperPathways for ASIC4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ASIC4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ASIC4-AS1 Gene

Drugs & Compounds for ASIC4-AS1 Gene

No Compound Related Data Available

Transcripts for ASIC4-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ASIC4-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005249AE_9606 lncRNA 519 4

HGNC: 40960,

Ensembl: ENST00000429882 (view in UCSC) ,

LNCipedia: lnc-CHPF-1:1,

NONCODE: NONHSAT077042.2,

URS00009B51DF_9606 lncRNA 519 1

NONCODE: NONHSAT186331.1,

ASIC4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ASIC4-AS1 Gene

No ASD Table

Relevant External Links for ASIC4-AS1 Gene

GeneLoc Exon Structure for
ASIC4-AS1

No data available for mRNA/cDNA for ASIC4-AS1 Gene

Expression for ASIC4-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ASIC4-AS1 Gene

Orthologs for ASIC4-AS1 Gene

Evolution for ASIC4-AS1 Gene

ENSEMBL:
Gene Tree for ASIC4-AS1 (if available)
TreeFam:
Gene Tree for ASIC4-AS1 (if available)

No data available for Orthologs for ASIC4-AS1 Gene

Paralogs for ASIC4-AS1 Gene

No data available for Paralogs for ASIC4-AS1 Gene

Variants for ASIC4-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ASIC4-AS1 Gene

SNP ID Clinical significance and condition Chr 02 pos Variation AA Info Type
638484 Uncertain Significance: Myopathy, centronuclear, 5 219,484,725(-) C/T MISSENSE_VARIANT
682213 Likely Benign: not provided 219,505,755(-) G/A SYNONYMOUS_VARIANT
682536 Likely Benign: not provided 219,500,035(-) G/A INTRON_VARIANT
710316 Benign: not provided 219,484,663(-) C/A SYNONYMOUS_VARIANT
711859 Benign: not provided 219,483,214(-) G/A SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for ASIC4-AS1 Gene

Additional Variant Information for ASIC4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ASIC4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ASIC4-AS1 Gene

Disorders for ASIC4-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ASIC4-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
myopathy, centronuclear, 5
  • cnm5
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ASIC4-AS1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ASIC4-AS1 Gene

Publications for ASIC4-AS1 Gene

No publications were found for ASIC4-AS1 Gene.

No data available for Mastermind for ASIC4-AS1 Gene

Products for ASIC4-AS1 Gene

Sources for ASIC4-AS1 Gene