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Aliases for ASB16-AS1 Gene

Subcategory (RNA class) for ASB16-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ASB16-AS1 Gene

  • ASB16 Antisense RNA 1 2 3 4 5
  • C17orf65 3 4
  • Chromosome 17 Open Reading Frame 65 2
  • ASB16 Antisense Gene Protein 1 4
  • CTB-175E5.4 3

External Ids for ASB16-AS1 Gene

Previous HGNC Symbols for ASB16-AS1 Gene

  • C17orf65

Previous GeneCards Identifiers for ASB16-AS1 Gene

  • GC17M042254

Summaries for ASB16-AS1 Gene

GeneCards Summary for ASB16-AS1 Gene

ASB16-AS1 (ASB16 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ASB16-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ASB16-AS1 Gene

Genomics for ASB16-AS1 Gene

GeneHancer (GH) Regulatory Elements for ASB16-AS1 Gene

Promoters and enhancers for ASB16-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I044185 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 584.4 -0.3 -286 3.7 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A ZNF2 IRF4 YY1 ASB16-AS1 TMUB2 PIR42921 DHX8 EFTUD2 UBTF ASB16 GPATCH8 ENSG00000224505 ENSG00000267160
GH17I045143 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 125.4 -961.2 -961230 9.6 CLOCK MLX FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 E2F8 HEXIM1 ENSG00000276728 GC17M045149 ENSG00000262372 ASB16-AS1 UBTF TMUB2 ENSG00000224505 LINC02210 MAP3K14-AS1
GH17I043322 Enhancer 1.5 Ensembl ENCODE dbSUPER 222.3 +863.6 863554 1.6 CLOCK MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF213 ZNF416 ZNF143 ENSG00000267340 UBTF ASB16-AS1 ENSG00000267002 DHX8 HMGN1P29 TMUB2 NBR2 LINC00910 PLEKHH3
GH17I044818 Enhancer 1.4 Ensembl ENCODE dbSUPER 91.1 -633.7 -633678 3.4 ARNT ZNF493 ZFP64 FEZF1 ZNF2 ZNF121 ZNF213 KLF7 FOS ZNF202 UBTF ASB16-AS1 TMUB2 GPATCH8 GJC1 MPP2 ENSG00000266918 LINC02210 ENSG00000260793 EFTUD2
GH17I044707 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 55.7 -522.0 -521950 2.3 HDGF PKNOX1 SMAD1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 DBF4B TMUB2 ASB16-AS1 ENSG00000224505 EFTUD2 UBTF C17orf53 MAP3K14-AS1 HEXIM1 MAP3K14
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ASB16-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ASB16-AS1 Gene

Genomic Locations for ASB16-AS1 Gene
chr17:44,175,973-44,186,717
(GRCh38/hg38)
Size:
10,745 bases
Orientation:
Minus strand
chr17:42,253,341-42,264,085
(GRCh37/hg19)

Genomic View for ASB16-AS1 Gene

Genes around ASB16-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ASB16-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ASB16-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ASB16-AS1 Gene

Proteins for ASB16-AS1 Gene

  • Protein details for ASB16-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q495Z4-ASAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein ASB16-AS1
    Protein Accession:
    Q495Z4
    Secondary Accessions:
    • Q495Z5
    • Q495Z6

    Protein attributes for ASB16-AS1 Gene

    Size:
    193 amino acids
    Molecular mass:
    20099 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ASB16-AS1 Gene

Post-translational modifications for ASB16-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ASB16-AS1 Gene

Domains & Families for ASB16-AS1 Gene

Protein Domains for ASB16-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ASB16-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ASB16-AS1 Gene

Function for ASB16-AS1 Gene

Phenotypes From GWAS Catalog for ASB16-AS1 Gene

Phenotypes for ASB16-AS1 Gene

GenomeRNAi human phenotypes for ASB16-AS1:
genes like me logo Genes that share phenotypes with ASB16-AS1: view

Animal Model Products

miRNA for ASB16-AS1 Gene

miRTarBase miRNAs that target ASB16-AS1

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ASB16-AS1 Gene

Localization for ASB16-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ASB16-AS1 gene
Compartment Confidence
nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ASB16-AS1 Gene

Pathways & Interactions for ASB16-AS1 Gene

SuperPathways for ASB16-AS1 Gene

No Data Available

Interacting Proteins for ASB16-AS1 Gene

Selected Interacting proteins: Q495Z4-ASAS1_HUMAN for ASB16-AS1 Gene via IID

Symbol External ID(s) Details
SHBG

Gene Ontology (GO) - Biological Process for ASB16-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ASB16-AS1 Gene

Drugs & Compounds for ASB16-AS1 Gene

No Compound Related Data Available

Transcripts for ASB16-AS1 Gene

Unigene Clusters for ASB16-AS1 Gene

ASB16 antisense RNA 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ASB16-AS1 Gene

No ASD Table

Relevant External Links for ASB16-AS1 Gene

GeneLoc Exon Structure for
ASB16-AS1
ECgene alternative splicing isoforms for
ASB16-AS1

Expression for ASB16-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ASB16-AS1 Gene

Protein differential expression in normal tissues from HIPED for ASB16-AS1 Gene

This gene is overexpressed in Breast (60.5) and Adipocyte (8.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ASB16-AS1 Gene



Protein tissue co-expression partners for ASB16-AS1 Gene

- Elite partner

SOURCE GeneReport for Unigene cluster for ASB16-AS1 Gene:

Hs.656564
genes like me logo Genes that share expression patterns with ASB16-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ASB16-AS1 Gene

Orthologs for ASB16-AS1 Gene

Evolution for ASB16-AS1 Gene

ENSEMBL:
Gene Tree for ASB16-AS1 (if available)
TreeFam:
Gene Tree for ASB16-AS1 (if available)

No data available for Orthologs for ASB16-AS1 Gene

Paralogs for ASB16-AS1 Gene

(1) SIMAP similar genes for ASB16-AS1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ASB16-AS1: view

No data available for Paralogs for ASB16-AS1 Gene

Variants for ASB16-AS1 Gene

Sequence variations from dbSNP and Humsavar for ASB16-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000043239 -- 44,180,435(-) C/A intron_variant
rs1000075746 -- 44,179,609(-) C/T intron_variant
rs1000077907 -- 44,182,996(-) G/A intron_variant, non_coding_transcript_variant
rs1000341675 -- 44,187,027(-) C/T upstream_transcript_variant
rs1000545036 -- 44,186,787(-) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ASB16-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv529n67 CNV gain 20364138
nsv1134654 CNV deletion 24896259
nsv1146669 OTHER inversion 26484159
nsv833455 CNV loss 17160897

Additional Variant Information for ASB16-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ASB16-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ASB16-AS1 Gene

Disorders for ASB16-AS1 Gene

Additional Disease Information for ASB16-AS1

No disorders were found for ASB16-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ASB16-AS1 Gene

Publications for ASB16-AS1 Gene

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 58
  4. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody MC … Nusbaum C (Nature 2006) 4 58
  5. Yeast two-hybrid identification of prostatic proteins interacting with human sex hormone-binding globulin. (PMID: 15862967) Pope SN … Lee IR (The Journal of steroid biochemistry and molecular biology 2005) 3 58

Products for ASB16-AS1 Gene

Sources for ASB16-AS1 Gene

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