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Aliases for ASAP1-IT2 Gene

Subcategory (RNA class) for ASAP1-IT2 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ASAP1-IT2 Gene

  • ASAP1 Intronic Transcript 2 2 3 5
  • ASAP1 Intronic Transcript 2 (Non-Protein Coding) 2 3

External Ids for ASAP1-IT2 Gene

ORGUL Members for ASAP1-IT2 Gene

Previous GeneCards Identifiers for ASAP1-IT2 Gene

  • GC08M131097

Summaries for ASAP1-IT2 Gene

GeneCards Summary for ASAP1-IT2 Gene

ASAP1-IT2 (ASAP1 Intronic Transcript 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ASAP1-IT2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ASAP1-IT2 Gene

Genomics for ASAP1-IT2 Gene

GeneHancer (GH) Regulatory Elements for ASAP1-IT2 Gene

Promoters and enhancers for ASAP1-IT2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J130085 Enhancer 0.5 ENCODE dbSUPER 650.7 -1.2 -1162 0.9 ZIC2 ASAP1-IT2 FAM49B ASAP1 ENSG00000212342
GH08J130079 Enhancer 0.8 ENCODE dbSUPER 0.7 +4.7 4655 1.1 CBFB JUNB EBF1 DPF2 BATF ATF2 IRF4 RELA BCL11A IKZF1 ASAP1-IT2 GC08P130073 ASAP1
GH08J130094 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -10.3 -10274 0.5 SIX4 CTCF CLOCK FOXA2 RAD21 RFX5 YY1 ZNF143 SMC3 ZFP91 FAM49B RNU6-1255P ASAP1-IT2 ENSG00000212342 ASAP1
GH08J130096 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -12.6 -12594 3.5 MXI1 L3MBTL2 NFIB JUN MAX SIN3A MNT JUND ZSCAN16 NFE2 FAM49B RNU6-1255P RNU7-181P ASAP1 ASAP1-IT2 ENSG00000212342
GH08J130101 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 0.4 -17.2 -17221 0.4 ZNF512 NRF1 ATF7 ATF2 RNU7-181P ASAP1-IT2 ENSG00000212342 ASAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ASAP1-IT2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ASAP1-IT2 Gene

Genomic Locations for ASAP1-IT2 Gene
chr8:130,082,738-130,084,768
(GRCh38/hg38)
Size:
2,031 bases
Orientation:
Minus strand
chr8:131,096,015-131,097,014
(GRCh37/hg19)
Size:
1,000 bases
Orientation:
Minus strand

Genomic View for ASAP1-IT2 Gene

Genes around ASAP1-IT2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ASAP1-IT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ASAP1-IT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ASAP1-IT2 Gene

Proteins for ASAP1-IT2 Gene

Post-translational modifications for ASAP1-IT2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ASAP1-IT2 Gene

Domains & Families for ASAP1-IT2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ASAP1-IT2 Gene

Function for ASAP1-IT2 Gene

Phenotypes From GWAS Catalog for ASAP1-IT2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ASAP1-IT2 Gene

Localization for ASAP1-IT2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ASAP1-IT2 Gene

Pathways & Interactions for ASAP1-IT2 Gene

SuperPathways for ASAP1-IT2 Gene

No Data Available

Interacting Proteins for ASAP1-IT2 Gene

Gene Ontology (GO) - Biological Process for ASAP1-IT2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ASAP1-IT2 Gene

Drugs & Compounds for ASAP1-IT2 Gene

No Compound Related Data Available

Transcripts for ASAP1-IT2 Gene

mRNA/cDNA for ASAP1-IT2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ASAP1-IT2 Gene

No ASD Table

Relevant External Links for ASAP1-IT2 Gene

GeneLoc Exon Structure for
ASAP1-IT2
ECgene alternative splicing isoforms for
ASAP1-IT2

Expression for ASAP1-IT2 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ASAP1-IT2 Gene

Orthologs for ASAP1-IT2 Gene

Evolution for ASAP1-IT2 Gene

ENSEMBL:
Gene Tree for ASAP1-IT2 (if available)
TreeFam:
Gene Tree for ASAP1-IT2 (if available)

No data available for Orthologs for ASAP1-IT2 Gene

Paralogs for ASAP1-IT2 Gene

No data available for Paralogs for ASAP1-IT2 Gene

Variants for ASAP1-IT2 Gene

Sequence variations from dbSNP and Humsavar for ASAP1-IT2 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000160727 -- 130,084,804(-) C/A upstream_transcript_variant
rs1000493167 -- 130,086,240(-) C/T upstream_transcript_variant
rs1001270974 -- 130,082,945(-) A/C non_coding_transcript_variant
rs1003116949 -- 130,086,019(-) C/A upstream_transcript_variant
rs1004931686 -- 130,086,501(-) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ASAP1-IT2 Gene

Variant ID Type Subtype PubMed ID
esv3576608 CNV gain 25503493
nsv1018045 CNV gain 25217958
nsv465808 CNV loss 19166990
nsv465810 CNV gain 19166990
nsv524349 CNV gain 19592680
nsv612231 CNV gain 21841781
nsv612232 CNV loss 21841781
nsv612234 CNV gain 21841781

Additional Variant Information for ASAP1-IT2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ASAP1-IT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ASAP1-IT2 Gene

Disorders for ASAP1-IT2 Gene

Additional Disease Information for ASAP1-IT2

No disorders were found for ASAP1-IT2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ASAP1-IT2 Gene

Publications for ASAP1-IT2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for ASAP1-IT2 Gene

Sources for ASAP1-IT2 Gene

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