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Aliases for ASAP1-IT1 Gene

Subcategory (RNA class) for ASAP1-IT1 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for ASAP1-IT1 Gene

  • ASAP1 Intronic Transcript 1 2 3
  • ArfGAP With SH3 Domain, Ankyrin Repeat And PH Domain 1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • DDEF1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • ASAP1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • ASAP1 Intronic Transcript (Non-Protein Coding) 3
  • DDEF1 Intronic Transcript 1 2
  • Non-Protein Coding RNA 50 2
  • NCRNA00050 3
  • ASAP1-IT 3
  • ASAP1IT1 3
  • DDEF1IT1 3
  • ASAP1IT 3
  • HSPC054 3

External Ids for ASAP1-IT1 Gene

ORGUL Members for ASAP1-IT1 Gene

Previous HGNC Symbols for ASAP1-IT1 Gene

  • DDEF1IT1

Previous GeneCards Identifiers for ASAP1-IT1 Gene

  • GC08M131308

Summaries for ASAP1-IT1 Gene

GeneCards Summary for ASAP1-IT1 Gene

ASAP1-IT1 (ASAP1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ASAP1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ASAP1-IT1 Gene

Genomics for ASAP1-IT1 Gene

GeneHancer (GH) Regulatory Elements for ASAP1-IT1 Gene

Promoters and enhancers for ASAP1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I130294 Enhancer 0.5 ENCODE dbSUPER 550.8 +1.8 1803 0.2 PRDM6 ASAP1-IT1 GC08M130220 ASAP1
GH08I130296 Enhancer 0.4 Ensembl dbSUPER 550.8 +0.3 332 0.4 ASAP1-IT1 ASAP1 GC08M130220
GH08I130292 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.8 +2.7 2735 1.6 ELF3 PKNOX1 SMAD1 ARID4B BMI1 DMAP1 RAD21 ETS1 ZNF207 ATF7 ASAP1-IT1 GC08M130220 ASAP1
GH08I130283 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.0 12001 1.8 HDGF HDAC1 YBX3 PKNOX1 ATF1 ZSCAN4 BMI1 BATF IRF4 ZBTB40 ASAP1 FAM49B ASAP1-IT1 GC08M130220
GH08I130276 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +18.2 18231 4.6 HDGF ELF3 FOXA2 ZSCAN4 EGR1 ETV6 FOS BCLAF1 IKZF2 RUNX3 ASAP1 ASAP1-IT1 GC08M130220
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ASAP1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ASAP1-IT1 Gene

Genomic Locations for ASAP1-IT1 Gene
chr8:130,295,355-130,296,533
(GRCh38/hg38)
Size:
1,179 bases
Orientation:
Minus strand
chr8:131,307,601-131,308,779
(GRCh37/hg19)

Genomic View for ASAP1-IT1 Gene

Genes around ASAP1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ASAP1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ASAP1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ASAP1-IT1 Gene

Proteins for ASAP1-IT1 Gene

Post-translational modifications for ASAP1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ASAP1-IT1 Gene

Domains & Families for ASAP1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ASAP1-IT1 Gene

Function for ASAP1-IT1 Gene

Phenotypes From GWAS Catalog for ASAP1-IT1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ASAP1-IT1 Gene

Localization for ASAP1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ASAP1-IT1 Gene

Pathways & Interactions for ASAP1-IT1 Gene

SuperPathways for ASAP1-IT1 Gene

No Data Available

Interacting Proteins for ASAP1-IT1 Gene

Gene Ontology (GO) - Biological Process for ASAP1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ASAP1-IT1 Gene

Drugs & Compounds for ASAP1-IT1 Gene

No Compound Related Data Available

Transcripts for ASAP1-IT1 Gene

mRNA/cDNA for ASAP1-IT1 Gene

(2) Additional mRNA sequences :

Unigene Clusters for ASAP1-IT1 Gene

ASAP1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ASAP1-IT1 Gene

No ASD Table

Relevant External Links for ASAP1-IT1 Gene

GeneLoc Exon Structure for
ASAP1-IT1
ECgene alternative splicing isoforms for
ASAP1-IT1

Expression for ASAP1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ASAP1-IT1 Gene

SOURCE GeneReport for Unigene cluster for ASAP1-IT1 Gene:

Hs.639318
genes like me logo Genes that share expression patterns with ASAP1-IT1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ASAP1-IT1 Gene

Orthologs for ASAP1-IT1 Gene

No data available for Orthologs and Evolution for ASAP1-IT1 Gene

Paralogs for ASAP1-IT1 Gene

No data available for Paralogs for ASAP1-IT1 Gene

Variants for ASAP1-IT1 Gene

Sequence variations from dbSNP and Humsavar for ASAP1-IT1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1001815501 -- 130,297,042(-) G/A/T upstream_transcript_variant
rs1001899909 -- 130,296,766(-) A/G upstream_transcript_variant
rs1002182786 -- 130,297,252(-) C/T upstream_transcript_variant
rs1002411091 -- 130,298,123(-) G/A upstream_transcript_variant
rs1002549517 -- 130,298,189(-) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ASAP1-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv1016494 CNV gain 25217958
nsv465810 CNV gain 19166990
nsv612234 CNV gain 21841781
nsv949983 CNV duplication 24416366

Additional Variant Information for ASAP1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ASAP1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ASAP1-IT1 Gene

Disorders for ASAP1-IT1 Gene

Additional Disease Information for ASAP1-IT1

No disorders were found for ASAP1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ASAP1-IT1 Gene

Publications for ASAP1-IT1 Gene

  1. Long noncoding RNA ASAP1-IT1 promotes cancer stemness and predicts a poor prognosis in patients with bladder cancer. (PMID: 28895409) Yang L … Guo H (Neoplasma 2017) 2 3 58
  2. Long non-coding RNAs, ASAP1-IT1, FAM215A, and LINC00472, in epithelial ovarian cancer. (PMID: 27667152) Fu Y … Yu H (Gynecologic oncology 2016) 2 3 58
  3. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang QH … Chen Z (Genome research 2000) 2 3 58

Products for ASAP1-IT1 Gene

Sources for ASAP1-IT1 Gene

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