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Aliases for AS-PTPRE Gene

Subcategory (RNA class) for AS-PTPRE Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for AS-PTPRE Gene

  • LncRNA Antisense To PTPRE Protein-Coding Gene 3

External Ids for AS-PTPRE Gene

Summaries for AS-PTPRE Gene

GeneCards Summary for AS-PTPRE Gene

AS-PTPRE (LncRNA Antisense To PTPRE Protein-Coding Gene) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for AS-PTPRE Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AS-PTPRE Gene

Genomics for AS-PTPRE Gene

GeneHancer (GH) Regulatory Elements for AS-PTPRE Gene

Promoters and enhancers for AS-PTPRE Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I128061 Enhancer 1.2 Ensembl ENCODE dbSUPER 550.8 -1.1 -1075 4.8 HDGF PKNOX1 BMI1 ZBTB40 BATF KLF5 IRF4 EGR1 ATF7 ETV6 AS-PTPRE GC10M128055 PTPRE
GH10I128057 Enhancer 0.8 dbSUPER 0.8 +4.0 3954 3.9 HDGF NCOA3 ZNF473 SUZ12 ZSCAN4 ZNF704 YBX1 CDC5L ZBTB7B E4F1 PTPRE AS-PTPRE GC10M128051 GC10M128055
GH10I128053 Enhancer 0.4 ENCODE dbSUPER 0.4 +8.8 8807 1.7 GC10M128051 AS-PTPRE PTPRE
GH10I128052 Enhancer 0.4 FANTOM5 dbSUPER 0.4 +10.1 10073 0.2 GC10M128051 PTPRE AS-PTPRE
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around AS-PTPRE on UCSC Golden Path with GeneCards custom track

Genomic Locations for AS-PTPRE Gene

Genomic Locations for AS-PTPRE Gene
chr10:128,056,197-128,063,076
(GRCh38/hg38)
Size:
6,880 bases
Orientation:
Minus strand

Genomic View for AS-PTPRE Gene

Genes around AS-PTPRE on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AS-PTPRE Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AS-PTPRE Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AS-PTPRE Gene

Proteins for AS-PTPRE Gene

Post-translational modifications for AS-PTPRE Gene

No Post-translational modifications

No data available for DME Specific Peptides for AS-PTPRE Gene

Domains & Families for AS-PTPRE Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AS-PTPRE Gene

Function for AS-PTPRE Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AS-PTPRE Gene

Localization for AS-PTPRE Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AS-PTPRE Gene

Pathways & Interactions for AS-PTPRE Gene

SuperPathways for AS-PTPRE Gene

No Data Available

Interacting Proteins for AS-PTPRE Gene

Gene Ontology (GO) - Biological Process for AS-PTPRE Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AS-PTPRE Gene

Drugs & Compounds for AS-PTPRE Gene

No Compound Related Data Available

Transcripts for AS-PTPRE Gene

Alternative Splicing Database (ASD) splice patterns (SP) for AS-PTPRE Gene

No ASD Table

Relevant External Links for AS-PTPRE Gene

GeneLoc Exon Structure for
AS-PTPRE

No data available for mRNA/cDNA for AS-PTPRE Gene

Expression for AS-PTPRE Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AS-PTPRE Gene

Orthologs for AS-PTPRE Gene

No data available for Orthologs and Evolution for AS-PTPRE Gene

Paralogs for AS-PTPRE Gene

No data available for Paralogs for AS-PTPRE Gene

Variants for AS-PTPRE Gene

Sequence variations from dbSNP and Humsavar for AS-PTPRE Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000056326 -- 128,060,111(-) A/G intron_variant
rs1000564864 -- 128,061,864(-) A/G intron_variant
rs1000620378 -- 128,062,105(-) C/G intron_variant
rs1001057548 -- 128,058,645(-) C/T intron_variant
rs1001270633 -- 128,060,352(-) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for AS-PTPRE Gene

Disorders for AS-PTPRE Gene

Additional Disease Information for AS-PTPRE

No disorders were found for AS-PTPRE Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AS-PTPRE Gene

Publications for AS-PTPRE Gene

No publications were found for AS-PTPRE Gene.

Products for AS-PTPRE Gene

Sources for AS-PTPRE Gene

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