Aliases for ART3 Gene
Aliases for ART3 Gene
External Ids for ART3 Gene
- HGNC: 725
- Entrez Gene: 419
- Ensembl: ENSG00000156219
- OMIM: 603086
- UniProtKB: Q13508
Previous GeneCards Identifiers for ART3 Gene
- GC04P076891
- GC04P077186
- GC04P077325
- GC04P077454
- GC04P077353
- GC04P076932
- GC04P072684
Summaries for ART3 Gene
-
This gene encodes an arginine-specific ADP-ribosyltransferase. The encoded protein catalyzes a reversible reaction which modifies proteins by the addition or removal of ADP-ribose to an arginine residue to regulate the function of the modified protein. An ADP-ribosyltransferase pseudogene is located on chromosome 11. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2011]
GeneCards Summary for ART3 Gene
ART3 (ADP-Ribosyltransferase 3) is a Protein Coding gene. Among its related pathways are Metabolism of proteins and NAD metabolism. Gene Ontology (GO) annotations related to this gene include NAD+ ADP-ribosyltransferase activity and NAD(P)+-protein-arginine ADP-ribosyltransferase activity. An important paralog of this gene is ART5.
No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ART3 Gene
Genomics for ART3 Gene
GeneHancer (GH) Regulatory Elements for ART3 Gene
Promoters and enhancers for ART3 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH04I076011 | Promoter/Enhancer | 1.4 | EPDnew Ensembl ENCODE | 610 | +1.1 | 1104 | 2.5 | EBF1 BMI1 BATF RELA ZNF766 IKZF2 CBFB NRF1 NR2F1 JUNB | ART3 NAAA NUP54 CXCL10 GC04M075923 | |
| GH04I076074 | Promoter | 0.5 | EPDnew | 561.4 | +63.5 | 63514 | 0.1 | ART3 CXCL9 SDAD1 LOC101928809 CXCL10 PPEF2 GC04P076101 CXCL11 | ||
| GH04I076027 | Enhancer | 1.1 | FANTOM5 Ensembl ENCODE | 61.7 | +17.3 | 17254 | 1.1 | MEIS2 NFIC STAT1 NFIA NFIB SOX6 YY1 | ART3 CXCL9 CXCL10 CXCL11 SDAD1 NAAA GC04M075923 RPL36P8 | |
| GH04I076059 | Enhancer | 0.9 | FANTOM5 ENCODE | 75.2 | +48.8 | 48795 | 1.2 | ZGPAT ZNF512 CREB1 ZNF384 HNF4A ZBTB40 SPI1 NR2C2 | ART3 CXCL10 CXCL9 NAAA CXCL11 SDAD1 LOC101928809 GC04P076101 | |
| GH04I076250 | Promoter/Enhancer | 2.2 | EPDnew FANTOM5 Ensembl ENCODE | 21.1 | +240.6 | 240567 | 1.8 | FOXA2 ARID4B SIN3A DMAP1 ZNF48 YY1 RXRA YY2 ZHX2 MXD4 | LOC105377286 FAM47E-STBD1 ART3 FAM47E CCDC158 SCARB2 STBD1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around ART3 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for ART3 Gene
Genomic Locations for ART3 Gene
- chr4:76,011,180-76,112,802
- (GRCh38/hg38)
- Size:
- 101,623 bases
- Orientation:
- Plus strand
- chr4:76,932,337-77,033,955
- (GRCh37/hg19)
Genomic View for ART3 Gene
Genes around ART3 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 4q21.1 by Ensembl
- 4q21.1|4p15.1-p14 by Entrez Gene
- 4q21.1 by HGNC
ART3 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ART3 Gene
Proteins for ART3 Gene
-
Protein details for ART3 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q13508-NAR3_HUMAN
- Recommended name:
- Ecto-ADP-ribosyltransferase 3
- Protein Accession:
- Q13508
- Q53XW3
- Q6FHT7
- Q8WVJ7
- Q93069
- Q96HL1
Protein attributes for ART3 Gene
- Size:
- 389 amino acids
- Molecular mass:
- 43923 Da
- Quaternary structure:
- No Data Available
Protein Expression for ART3 Gene
Post-translational modifications for ART3 Gene
- O-glycosylated with core 1 or possibly core 8 glycans.
- Glycosylation at Asn248 and posLast=346346
- Modification sites at PhosphoSitePlus
Other Protein References for ART3 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
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-
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-
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Protein Products
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- antibodies-online: Search results for 5 available ART3 Proteins ranked by validation data
- Compare Top ART3 Proteins
-
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-
Abcam proteins for ART3
Assay Products
- antibodies-online: Search results for 1 available ART3 Elisa Kits ranked by validation data
- Compare Top ART3 Elisa Kits
-
Quality Products:
No data available for DME Specific Peptides for ART3 Gene
Domains & Families for ART3 Gene
Gene Families for ART3 Gene
- Human Protein Atlas (HPA):
-
- Enzymes
- Predicted intracellular proteins
- Predicted membrane proteins
- Predicted secreted proteins
Protein Domains for ART3 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for ART3 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q13508- Family:
-
- Belongs to the Arg-specific ADP-ribosyltransferase family.
Function for ART3 Gene
Molecular function for ART3 Gene
- GENATLAS Biochemistry:
- ADP-ribosyltransferase 3,expressed in testis
- UniProtKB/Swiss-Prot CatalyticActivity:
- NAD(+) + protein-L-arginine = nicotinamide + N(omega)-(ADP-D-ribosyl)-protein-L-arginine.
Enzyme Numbers (IUBMB) for ART3 Gene
Phenotypes From GWAS Catalog for ART3 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0003950 | NAD+ ADP-ribosyltransferase activity | TAS | 9119374 |
| GO:0003956 | NAD(P)+-protein-arginine ADP-ribosyltransferase activity | IEA | -- |
| GO:0016740 | transferase activity | IEA | -- |
| GO:0016757 | transferase activity, transferring glycosyl groups | IEA | -- |
Phenotypes for ART3 Gene
- MGI mutant phenotypes for ART3:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for ART3:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
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-
-
ViGene Biosciences lentiviral particle packaged cDNA for ART3 gene
-
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- Search ViGene Biosciences for ART3
CRISPR Products
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- genomics-online: gRNA clones - Search results for available ART3 gene related products
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-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for ART3
- GenScript: Design CRISPR guide RNA sequences for ART3
miRNA for ART3 Gene
- miRTarBase miRNAs that target ART3
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- Search ViGene Biosciences for ART3
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- Browse OriGene Inhibitory RNA Products For ART3
- genomics-online: shRNA clones - Search results for available ART3 gene related products
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Clone Products
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-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- genomics-online: cdna clones - Search results for available ART3 gene related products
- orf clones - Search results for available ART3 gene related products
- Applied Biological Materials Clones for ART3
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
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Horizon Cell Lines for ART3
-
ViGene Biosciences adenoviral particle packaged cDNA for ART3 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for ART3 gene
-
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No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ART3 Gene
Localization for ART3 Gene
Subcellular locations from UniProtKB/Swiss-Prot for ART3 Gene
- Cell membrane; Lipid-anchor, GPI-anchor.
| Compartment | Confidence |
|---|---|
| plasma membrane | 5 |
| extracellular | 5 |
| endoplasmic reticulum | 2 |
| peroxisome | 1 |
| golgi apparatus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005576 | extracellular region | TAS | -- |
| GO:0005886 | plasma membrane | TAS | -- |
| GO:0005887 | integral component of plasma membrane | TAS | 9119374 |
| GO:0016020 | membrane | IEA | -- |
| GO:0031225 | anchored component of membrane | IEA | -- |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for ART3 Gene
Pathways & Interactions for ART3 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Metabolism of proteins | ||
| 2 | Post-translational modification- synthesis of GPI-anchored proteins | ||
| 3 | NAD metabolism |
.42
|
|
Pathways by source for ART3 Gene
3 Reactome pathways for ART3 Gene
1 GeneGo (Thomson Reuters) pathway for ART3 Gene
Interacting Proteins for ART3 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006471 | protein ADP-ribosylation | IEA | -- |
| GO:0006501 | C-terminal protein lipidation | TAS | -- |
No data available for SIGNOR curated interactions for ART3 Gene
Drugs & Compounds for ART3 Gene
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs | |
|---|---|---|---|---|---|---|
| NADP |
|
53-59-8 |
|
Transcripts for ART3 Gene
mRNA/cDNA for ART3 Gene
- (14) REFSEQ mRNAs :
- (24) Additional mRNA sequences :
- (39) Selected AceView cDNA sequences:
- (15) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for ART3 Gene
- ADP-ribosyltransferase 3:
- Representative Sequences:
CRISPR Products
-
OriGene CRISPR knockouts for ART3
- genomics-online: gRNA clones - Search results for available ART3 gene related products
- Applied Biological Materials CRISPR for ART3
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for ART3
- GenScript: Design CRISPR guide RNA sequences for ART3
miRNA Products
- Search ViGene Biosciences for ART3
Inhibitory RNA Products
- Origene RNAi and shrna products in human, mouse, rat for ART3
- Browse OriGene Inhibitory RNA Products For ART3
- genomics-online: shRNA clones - Search results for available ART3 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for ART3 gene
Clone Products
-
OriGene ORF clones in human for ART3
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for ART3
- VectorBuilder custom plasmid, inducible vectors for ART3
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ART3
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- genomics-online: cdna clones - Search results for available ART3 gene related products
- orf clones - Search results for available ART3 gene related products
- Applied Biological Materials Clones for ART3
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | |||||||||||
| SP2: | - | - |
Expression for ART3 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Bone (Muscoskeletal System)
- Adipose (Muscoskeletal System)
- Cartilage (Muscoskeletal System)
-
Peripheral Nervous System (Nervous System)
- Immature Schwann Cells Peripheral Nerve Domain
-
Testis (Reproductive System)
mRNA differential expression in normal tissues according to GTEx for ART3 Gene
This gene is overexpressed in Muscle - Skeletal (x18.2), Heart - Left Ventricle (x7.5), Heart - Atrial Appendage (x6.0), and Testis (x5.4).
This gene is overexpressed in Ovary (29.3), Testis (25.4), and Serum (8.1).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ART3 Gene
NURSA nuclear receptor signaling pathways regulating expression of ART3 Gene:
ART3SOURCE GeneReport for Unigene cluster for ART3 Gene:
Hs.24976mRNA Expression by UniProt/SwissProt for ART3 Gene:
Q13508-NAR3_HUMAN
Tissue specificity:
Testis specific.
Evidence on tissue expression from TISSUES for ART3 Gene
- Muscle(4.5)
- Heart(2.1)
Primer Products
-
OriGene qPCR primer pairs for ART3
-
OriGene qPCR primer pairs and template standards for ART3
- genomics-online: primer clones - Search results for available ART3 gene related products
Gene Expression Assay Products
No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for ART3 Gene
Orthologs for ART3 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | ART3 33 34 |
|
||
| dog (Canis familiaris) |
Mammalia | ART3 33 34 |
|
||
| cow (Bos Taurus) |
Mammalia | ART3 33 34 |
|
||
| mouse (Mus musculus) |
Mammalia | Art3 16 34 33 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Art3 33 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | ART3 34 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | ART3 34 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | -- 34 |
|
OneToMany | |
| -- 34 |
|
OneToMany | |||
| lizard (Anolis carolinensis) |
Reptilia | -- 34 |
|
ManyToMany | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | art5 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | CABZ01019905.1 34 |
|
ManyToMany | |
| CR846080.3 34 |
|
ManyToMany | |||
| CABZ01019905.2 34 |
|
ManyToMany | |||
| CR846080.5 34 |
|
ManyToMany | |||
| si:ch211-51i16.3 34 |
|
ManyToMany | |||
| CABZ01064699.1 34 |
|
ManyToMany | |||
| si:ch73-379f5.5 34 |
|
ManyToMany | |||
| BX908804.1 34 |
|
ManyToMany | |||
| art4 34 |
|
ManyToMany | |||
| CR846080.4 34 |
|
ManyToMany | |||
| si:ch211-51i16.1 34 |
|
ManyToMany | |||
| CABZ01019904.1 34 |
|
ManyToMany | |||
| si:ch211-163m16.7 34 |
|
ManyToMany |
- Species where no ortholog for ART3 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for ART3 Gene
(1) SIMAP similar genes for ART3 Gene using alignment to 8 proteins:
Pseudogenes.org Pseudogenes for ART3 Gene
Variants for ART3 Gene
| SNP ID | Clin | Chr 04 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000003317 | -- | 76,074,667(+) | T/A | genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant | |
| rs10000130 | -- | 76,018,182(+) | T/C | genic_upstream_transcript_variant, intron_variant | |
| rs1000024629 | -- | 76,107,988(+) | A/G | downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant | |
| rs1000042782 | -- | 76,028,868(+) | T/G | genic_upstream_transcript_variant, intron_variant | |
| rs10000436 | -- | 76,018,491(+) | T/A | genic_upstream_transcript_variant, intron_variant |
Residual Variation Intolerance Score:
60.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
8.71;
86.55% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for ART3 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ART3
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ART3 Gene
Disorders for ART3 Gene
Additional Disease Information for ART3
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No disorders were found for ART3 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ART3 Gene
Publications for ART3 Gene
- Genome-wide expression of azoospermia testes demonstrates a specific profile and implicates ART3 in genetic susceptibility. (PMID: 18266473) Okada H … Inoue I (PLoS genetics 2008) 3 22 44 58
- Two novel human members of an emerging mammalian gene family related to mono-ADP-ribosylating bacterial toxins. (PMID: 9119374) Koch-Nolte F … Thiele HG (Genomics 1997) 2 3 4 58
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58
- Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 44 58
- Expression of toxin-related human mono-ADP-ribosyltransferase 3 in human testes. (PMID: 16625277) Friedrich M … Hauschildt S (Asian journal of andrology 2006) 3 22 58
Products for ART3 Gene
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- Cyagen custom Knockout/knockin (KOKI) mouse models for ART3
- VectorBuilder custom plasmid, inducible vectors for ART3
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ART3
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for 112 available ART3 Antibodies ranked by validation data
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- ViGene Biosciences adenoviral particle packaged cDNA for ART3 gene
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Sources for ART3 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
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