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Aliases for ARRDC3-AS1 Gene

Subcategory (RNA class) for ARRDC3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARRDC3-AS1 Gene

  • ARRDC3 Antisense RNA 1 2 3 5
  • ARRDC3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ARRDC3-AS1 Gene

Previous GeneCards Identifiers for ARRDC3-AS1 Gene

  • GC05P090676

Summaries for ARRDC3-AS1 Gene

GeneCards Summary for ARRDC3-AS1 Gene

ARRDC3-AS1 (ARRDC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ARRDC3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARRDC3-AS1 Gene

Genomics for ARRDC3-AS1 Gene

GeneHancer (GH) Regulatory Elements for ARRDC3-AS1 Gene

Promoters and enhancers for ARRDC3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I091376 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.6 585 8.5 CLOCK DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC MEF2D ARRDC3 ARRDC3-AS1 ENSG00000241059 CETN3 RPS18P7 ENSG00000260871 LYSMD3
GH05I091370 Enhancer 0.6 dbSUPER 0.4 -7.2 -7166 6.2 SMAD5 DACH1 CEBPB GATA3 POLR2B POLR2A ADNP SUPT5H LYSMD3 ENSG00000241059 GC05P091368 ARRDC3-AS1 ARRDC3
GH05I091390 Enhancer 0.6 ENCODE 0.4 +10.1 10132 0.2 NCOA3 PKNOX1 ZNF362 MAFG DPF2 ZFHX2 CTBP1 GATA3 ZNF316 NFE2 ARRDC3 ARRDC3-AS1 RAB5CP2
GH05I091419 Enhancer 0.6 ENCODE 0.3 +39.4 39432 0.2 CTCF ZNF654 DACH1 REST RAD21 ZNF507 YY1 PRDM6 SMC3 PRDM1 ARRDC3 ARRDC3-AS1 RAB5CP2
GH05I091405 Enhancer 0.2 FANTOM5 0.3 +24.7 24720 0 ARRDC3 ARRDC3-AS1 RAB5CP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ARRDC3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARRDC3-AS1 Gene

Genomic Locations for ARRDC3-AS1 Gene
chr5:91,380,347-91,439,085
(GRCh38/hg38)
Size:
58,739 bases
Orientation:
Plus strand
chr5:90,676,164-90,716,532
(GRCh37/hg19)

Genomic View for ARRDC3-AS1 Gene

Genes around ARRDC3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARRDC3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARRDC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARRDC3-AS1 Gene

Proteins for ARRDC3-AS1 Gene

Post-translational modifications for ARRDC3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARRDC3-AS1 Gene

Domains & Families for ARRDC3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARRDC3-AS1 Gene

Function for ARRDC3-AS1 Gene

Phenotypes From GWAS Catalog for ARRDC3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARRDC3-AS1 Gene

Localization for ARRDC3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARRDC3-AS1 Gene

Pathways & Interactions for ARRDC3-AS1 Gene

SuperPathways for ARRDC3-AS1 Gene

No Data Available

Interacting Proteins for ARRDC3-AS1 Gene

Gene Ontology (GO) - Biological Process for ARRDC3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARRDC3-AS1 Gene

Drugs & Compounds for ARRDC3-AS1 Gene

No Compound Related Data Available

Transcripts for ARRDC3-AS1 Gene

mRNA/cDNA for ARRDC3-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARRDC3-AS1 Gene

ARRDC3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ARRDC3-AS1 Gene

No ASD Table

Relevant External Links for ARRDC3-AS1 Gene

GeneLoc Exon Structure for
ARRDC3-AS1
ECgene alternative splicing isoforms for
ARRDC3-AS1

Expression for ARRDC3-AS1 Gene

SOURCE GeneReport for Unigene cluster for ARRDC3-AS1 Gene:

Hs.116364
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARRDC3-AS1 Gene

Orthologs for ARRDC3-AS1 Gene

Evolution for ARRDC3-AS1 Gene

ENSEMBL:
Gene Tree for ARRDC3-AS1 (if available)
TreeFam:
Gene Tree for ARRDC3-AS1 (if available)

No data available for Orthologs for ARRDC3-AS1 Gene

Paralogs for ARRDC3-AS1 Gene

No data available for Paralogs for ARRDC3-AS1 Gene

Variants for ARRDC3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARRDC3-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000060659 -- 91,416,094(+) T/C intron_variant
rs1000111665 -- 91,390,923(+) T/C intron_variant
rs1000121021 -- 91,409,195(+) T/G intron_variant
rs1000168599 -- 91,409,548(+) A/G intron_variant
rs1000410505 -- 91,415,784(+) G/A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ARRDC3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1623e212 CNV loss 25503493
nsv1145067 CNV deletion 24896259

Additional Variant Information for ARRDC3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARRDC3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARRDC3-AS1 Gene

Disorders for ARRDC3-AS1 Gene

Additional Disease Information for ARRDC3-AS1

No disorders were found for ARRDC3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARRDC3-AS1 Gene

Publications for ARRDC3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ARRDC3-AS1 Gene

Sources for ARRDC3-AS1 Gene

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