Aliases for ARRDC3-AS1 Gene

Subcategory (RNA class) for ARRDC3-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ARRDC3-AS1 Gene

  • ARRDC3 Antisense RNA 1 2 3 5
  • ARRDC3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ARRDC3-AS1 2 168
  • HSALNG0043449 167
  • NONHSAG041008 92

External Ids for ARRDC3-AS1 Gene

Previous GeneCards Identifiers for ARRDC3-AS1 Gene

  • GC05P090676

Summaries for ARRDC3-AS1 Gene

GeneCards Summary for ARRDC3-AS1 Gene

ARRDC3-AS1 (ARRDC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ARRDC3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ARRDC3-AS1 Gene

Genomics for ARRDC3-AS1 Gene

GeneHancer (GH) Regulatory Elements for ARRDC3-AS1 Gene

Promoters and enhancers for ARRDC3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J091376 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +0.6 585 8.5 RXRA FOXK2 HNRNPK ZBTB40 ZNF217 EP300 CTCF ZSCAN5C SIN3A NRF1 ARRDC3 ARRDC3-AS1 NONHSAG041007.2 lnc-LYSMD3-2 ENSG00000241059 LYSMD3 CETN3 ENSG00000240388 ENSG00000260871 lnc-ADGRV1-17
GH05J091374 Enhancer 0.5 dbSUPER 0.7 -5.0 -4990 1.9 BCLAF1 POLR2A POLR2G SMAD5 KHSRP RBFOX2 lnc-LYSMD3-1 ENSG00000240388 LYSMD3 ARRDC3-AS1 ARRDC3 lnc-LYSMD3-2
GH05J091390 Enhancer 0.8 Ensembl ENCODE 0.4 +10.2 10154 1 CUX1 CTBP1 ZNF316 NFE2 ZFHX2 PKNOX1 DPF2 MAFG ZNF384 GATA3 lnc-ADGRV1-17 lnc-ADGRV1-9 ARRDC3-AS1
GH05J091419 Enhancer 0.7 Ensembl ENCODE 0.3 +39.4 39449 0.6 CTCF REST RAD21 SMC3 ZNF205 ZNF654 PRDM6 ZNF507 DACH1 YY1 lnc-ADGRV1-11 piR-52294-113 ARRDC3-AS1
GH05J091468 Enhancer 0.7 FANTOM5 ENCODE 0.2 +89.5 89547 1.3 NRF1 GTF2E2 SPI1 FOSL1 NR3C1 MYC ATF3 RNF2 IKZF1 JUND RF00017-4788 lnc-ADGRV1-12 RAB5CP2 ARRDC3-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ARRDC3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARRDC3-AS1 Gene

Genomic Locations for ARRDC3-AS1 Gene
chr5:91,380,347-91,612,566
(GRCh38/hg38)
Size:
232,220 bases
Orientation:
Plus strand
chr5:90,676,164-90,716,532
(GRCh37/hg19)
Size:
40,369 bases
Orientation:
Plus strand

Genomic View for ARRDC3-AS1 Gene

Genes around ARRDC3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARRDC3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARRDC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARRDC3-AS1 Gene

Proteins for ARRDC3-AS1 Gene

Post-translational modifications for ARRDC3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARRDC3-AS1 Gene

Domains & Families for ARRDC3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ARRDC3-AS1 Gene

Function for ARRDC3-AS1 Gene

Phenotypes From GWAS Catalog for ARRDC3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARRDC3-AS1 Gene

Localization for ARRDC3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARRDC3-AS1 Gene

Pathways & Interactions for ARRDC3-AS1 Gene

PathCards logo

SuperPathways for ARRDC3-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ARRDC3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ARRDC3-AS1 Gene

Drugs & Compounds for ARRDC3-AS1 Gene

No Compound Related Data Available

Transcripts for ARRDC3-AS1 Gene

mRNA/cDNA for ARRDC3-AS1 Gene

13 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
4 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ARRDC3-AS1 Gene

No ASD Table

Relevant External Links for ARRDC3-AS1 Gene

GeneLoc Exon Structure for
ARRDC3-AS1

Expression for ARRDC3-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ARRDC3-AS1

SOURCE GeneReport for Unigene cluster for ARRDC3-AS1 Gene:

Hs.116364
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARRDC3-AS1 Gene

Orthologs for ARRDC3-AS1 Gene

Evolution for ARRDC3-AS1 Gene

ENSEMBL:
Gene Tree for ARRDC3-AS1 (if available)
TreeFam:
Gene Tree for ARRDC3-AS1 (if available)

No data available for Orthologs for ARRDC3-AS1 Gene

Paralogs for ARRDC3-AS1 Gene

No data available for Paralogs for ARRDC3-AS1 Gene

Variants for ARRDC3-AS1 Gene

Additional dbSNP identifiers (rs#s) for ARRDC3-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ARRDC3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1623e212 CNV loss 25503493
nsv1145067 CNV deletion 24896259

Additional Variant Information for ARRDC3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARRDC3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ARRDC3-AS1 Gene

Disorders for ARRDC3-AS1 Gene

Additional Disease Information for ARRDC3-AS1

No disorders were found for ARRDC3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARRDC3-AS1 Gene

Publications for ARRDC3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for ARRDC3-AS1 Gene

Sources for ARRDC3-AS1 Gene