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Aliases for ARRDC1-AS1 Gene

Subcategory (RNA class) for ARRDC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ARRDC1-AS1 Gene

  • ARRDC1 Antisense RNA 1 2 3 4 5
  • C9orf37 3 4
  • Chromosome 9 Open Reading Frame 37 2
  • ARRDC1 Antisense Gene Protein 1 4
  • AD038 3

External Ids for ARRDC1-AS1 Gene

Previous HGNC Symbols for ARRDC1-AS1 Gene

  • C9orf37

Summaries for ARRDC1-AS1 Gene

Entrez Gene Summary for ARRDC1-AS1 Gene

  • This transcribed locus is thought to be non-coding. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2014]

GeneCards Summary for ARRDC1-AS1 Gene

ARRDC1-AS1 (ARRDC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ARRDC1-AS1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARRDC1-AS1 Gene

Genomics for ARRDC1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ARRDC1-AS1 Gene

Promoters and enhancers for ARRDC1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I136684 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 13.2 +931.8 931752 4.7 SIN3A IRF4 YY1 POLR2B ZNF207 ZNF143 JUNB REST SMARCB1 ZNF592 AGPAT2 DPH7 INPP5E EXD3 ARRDC1-AS1 ANAPC2 QSOX2 NPDC1 AJM1 SNAPC4
GH09I137166 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13.8 +447.8 447761 10.1 HDGF SIN3A ZNF2 ZBTB7B GLIS2 ZNF143 KLF7 SP3 REST GMEB1 ENSG00000261793 MIR3621 LRRC26 TMEM210 MAN1B1 TPRN DPH7 INPP5E ARRDC1-AS1 EXD3
GH09I137193 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.9 +420.5 420457 9.8 HDGF PKNOX1 SMAD1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B TPRN EHMT1 SDCCAG3 LOC651337 ANAPC2 SNAPC4 FAM166A NDOR1 INPP5E ZMYND19
GH09I137577 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12 +40.5 40456 2.4 PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B CBX5 ZNF213 E2F8 DPH7 EHMT1 LOC651337 ANAPC2 EXD3 NDOR1 MAN1B1 ARRDC1-AS1 SNHG7 MRPL41
GH09I136613 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 13.8 +998.0 998044 14.5 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B DMAP1 YY1 FOS DEK DPH7 INPP5E ARRDC1-AS1 EXD3 SNAPC4 ANAPC2 QSOX2 NOTCH1 MAN1B1 CCDC183-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ARRDC1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARRDC1-AS1 Gene

Genomic Locations for ARRDC1-AS1 Gene
chr9:137,615,332-137,618,906
(GRCh38/hg38)
Size:
3,575 bases
Orientation:
Minus strand
chr9:140,509,784-140,513,358
(GRCh37/hg19)

Genomic View for ARRDC1-AS1 Gene

Genes around ARRDC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARRDC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARRDC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARRDC1-AS1 Gene

Proteins for ARRDC1-AS1 Gene

  • Protein details for ARRDC1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H2J1-CI037_HUMAN
    Recommended name:
    Uncharacterized protein ARRDC1-AS1
    Protein Accession:
    Q9H2J1
    Secondary Accessions:
    • Q17RM5
    • Q5T368

    Protein attributes for ARRDC1-AS1 Gene

    Size:
    176 amino acids
    Molecular mass:
    18048 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAG44726.1; Type=Frameshift; Positions=141; Evidence={ECO:0000305};

neXtProt entry for ARRDC1-AS1 Gene

Post-translational modifications for ARRDC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARRDC1-AS1 Gene

Domains & Families for ARRDC1-AS1 Gene

Protein Domains for ARRDC1-AS1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARRDC1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARRDC1-AS1 Gene

Function for ARRDC1-AS1 Gene

Phenotypes From GWAS Catalog for ARRDC1-AS1 Gene

Phenotypes for ARRDC1-AS1 Gene

genes like me logo Genes that share phenotypes with ARRDC1-AS1: view

Animal Model Products

CRISPR Products

miRNA for ARRDC1-AS1 Gene

miRTarBase miRNAs that target ARRDC1-AS1

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ARRDC1-AS1 Gene

Localization for ARRDC1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ARRDC1-AS1 gene
Compartment Confidence
nucleus 3
cytosol 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARRDC1-AS1 Gene

Pathways & Interactions for ARRDC1-AS1 Gene

SuperPathways for ARRDC1-AS1 Gene

No Data Available

Interacting Proteins for ARRDC1-AS1 Gene

Gene Ontology (GO) - Biological Process for ARRDC1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARRDC1-AS1 Gene

Drugs & Compounds for ARRDC1-AS1 Gene

No Compound Related Data Available

Transcripts for ARRDC1-AS1 Gene

mRNA/cDNA for ARRDC1-AS1 Gene

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARRDC1-AS1 Gene

No ASD Table

Relevant External Links for ARRDC1-AS1 Gene

GeneLoc Exon Structure for
ARRDC1-AS1
ECgene alternative splicing isoforms for
ARRDC1-AS1

Expression for ARRDC1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARRDC1-AS1 Gene

genes like me logo Genes that share expression patterns with ARRDC1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARRDC1-AS1 Gene

Orthologs for ARRDC1-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ARRDC1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9H9orf37 33
  • 98.48 (n)
C9orf37 34
  • 96 (a)
OneToOne
Species where no ortholog for ARRDC1-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ARRDC1-AS1 Gene

ENSEMBL:
Gene Tree for ARRDC1-AS1 (if available)
TreeFam:
Gene Tree for ARRDC1-AS1 (if available)

Paralogs for ARRDC1-AS1 Gene

No data available for Paralogs for ARRDC1-AS1 Gene

Variants for ARRDC1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARRDC1-AS1 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000134992 -- 137,615,336(-) G/A non_coding_transcript_variant
rs1000205690 -- 137,616,381(-) AAAAAAA/AAA intron_variant
rs1000237329 -- 137,617,680(-) T/A intron_variant
rs1000458570 -- 137,618,056(-) G/C non_coding_transcript_variant
rs1001206528 -- 137,619,090(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ARRDC1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv13012n54 CNV loss 21841781
nsv1075291 CNV deletion 25765185
nsv1144307 CNV deletion 24896259
nsv616023 CNV loss 21841781
nsv831762 CNV loss 17160897
nsv831763 CNV loss 17160897
nsv951212 CNV deletion 24416366

Variation tolerance for ARRDC1-AS1 Gene

Residual Variation Intolerance Score: 44.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.30; 6.65% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ARRDC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARRDC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARRDC1-AS1 Gene

Disorders for ARRDC1-AS1 Gene

Additional Disease Information for ARRDC1-AS1

No disorders were found for ARRDC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARRDC1-AS1 Gene

Publications for ARRDC1-AS1 Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3 4 58
  2. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PMID: 10931946) Hu RM … Chen JL (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ARRDC1-AS1 Gene

Sources for ARRDC1-AS1 Gene

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