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Aliases for ARNTL2-AS1 Gene

Subcategory (RNA class) for ARNTL2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARNTL2-AS1 Gene

  • ARNTL2 Antisense RNA 1 2 3 5

External Ids for ARNTL2-AS1 Gene

Previous GeneCards Identifiers for ARNTL2-AS1 Gene

  • GC12M027543

Summaries for ARNTL2-AS1 Gene

GeneCards Summary for ARNTL2-AS1 Gene

ARNTL2-AS1 (ARNTL2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ARNTL2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARNTL2-AS1 Gene

Genomics for ARNTL2-AS1 Gene

GeneHancer (GH) Regulatory Elements for ARNTL2-AS1 Gene

Promoters and enhancers for ARNTL2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I027570 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -127.1 -127109 6.8 FOXA2 JUN MAX RAD21 YY1 FOSL1 ZNF366 POLR2A HNF4G PRDM10 PPFIBP1 SMCO2 ARNTL2-AS1 PTHLH STK38L LOC100506578 ENSG00000248100
GH12I027588 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -145.7 -145669 8.4 SMARCE1 RFX1 BMI1 BATF IRF4 FOXA1 OSR2 GATA3 NFIC PPFIBP1 ARNTL2-AS1 SMCO2 LOC100506578 ENSG00000248100
GH12I027613 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.1 -170.7 -170713 6.9 PKNOX1 KLF17 SIN3A ZNF366 ZSCAN5C SCRT2 RCOR1 FOS CEBPB TSHZ1 SMCO2 ARNTL2-AS1 REP15 PPFIBP1 ENSG00000256377 ENSG00000256557 GC12P027690
GH12I027579 Enhancer 1 Ensembl ENCODE dbSUPER 11.4 -135.4 -135366 5.2 ZNF362 ZSCAN4 ZNF133 MAX RAD21 NR2F2 ZFHX2 PRDM1 RUNX3 EGR2 ARNTL2-AS1 PPFIBP1 SMCO2 LOC100506578 ENSG00000248100
GH12I027652 Enhancer 1.1 Ensembl ENCODE dbSUPER 9.5 -205.8 -205766 0.4 CTCF ZNF654 TRIM22 REST ZNF2 RAD21 RFX5 TEAD3 GATA3 IKZF1 ENSG00000256377 SMCO2 PPFIBP1 ARNTL2-AS1 GC12P027690 ENSG00000256557
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ARNTL2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARNTL2-AS1 Gene

Genomic Locations for ARNTL2-AS1 Gene
chr12:27,389,789-27,446,634
(GRCh38/hg38)
Size:
56,846 bases
Orientation:
Minus strand
chr12:27,542,722-27,599,558
(GRCh37/hg19)

Genomic View for ARNTL2-AS1 Gene

Genes around ARNTL2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARNTL2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARNTL2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARNTL2-AS1 Gene

Proteins for ARNTL2-AS1 Gene

Post-translational modifications for ARNTL2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARNTL2-AS1 Gene

Domains & Families for ARNTL2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARNTL2-AS1 Gene

Function for ARNTL2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARNTL2-AS1 Gene

Localization for ARNTL2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARNTL2-AS1 Gene

Pathways & Interactions for ARNTL2-AS1 Gene

SuperPathways for ARNTL2-AS1 Gene

No Data Available

Interacting Proteins for ARNTL2-AS1 Gene

Gene Ontology (GO) - Biological Process for ARNTL2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARNTL2-AS1 Gene

Drugs & Compounds for ARNTL2-AS1 Gene

No Compound Related Data Available

Transcripts for ARNTL2-AS1 Gene

mRNA/cDNA for ARNTL2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ARNTL2-AS1 Gene

No ASD Table

Relevant External Links for ARNTL2-AS1 Gene

GeneLoc Exon Structure for
ARNTL2-AS1
ECgene alternative splicing isoforms for
ARNTL2-AS1

Expression for ARNTL2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARNTL2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ARNTL2-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x7.9).
genes like me logo Genes that share expression patterns with ARNTL2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARNTL2-AS1 Gene

Orthologs for ARNTL2-AS1 Gene

Evolution for ARNTL2-AS1 Gene

ENSEMBL:
Gene Tree for ARNTL2-AS1 (if available)
TreeFam:
Gene Tree for ARNTL2-AS1 (if available)

No data available for Orthologs for ARNTL2-AS1 Gene

Paralogs for ARNTL2-AS1 Gene

No data available for Paralogs for ARNTL2-AS1 Gene

Variants for ARNTL2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARNTL2-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000033247 -- 27,393,070(-) A/G intron_variant
rs1000037848 -- 27,397,258(-) G/A intron_variant
rs1000049656 -- 27,404,468(-) G/A intron_variant
rs1000106382 -- 27,392,703(-) A/G intron_variant
rs1000111667 -- 27,438,855(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ARNTL2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv832357 CNV gain 17160897
nsv650 CNV insertion 18451855
nsv521872 CNV gain 19592680
nsv436825 CNV insertion 17901297
esv3628933 CNV gain 21293372
esv2745664 CNV deletion 23290073
dgv271e199 CNV deletion 23128226
dgv2417n54 CNV gain 21841781
dgv1406n100 CNV gain 25217958

Additional Variant Information for ARNTL2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARNTL2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARNTL2-AS1 Gene

Disorders for ARNTL2-AS1 Gene

Additional Disease Information for ARNTL2-AS1

No disorders were found for ARNTL2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARNTL2-AS1 Gene

Publications for ARNTL2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ARNTL2-AS1 Gene

Sources for ARNTL2-AS1 Gene

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