Aliases for ARNTL2-AS1 Gene

Data sources for ARNTL2-AS1 Gene:

Subcategory (RNA class) for ARNTL2-AS1 Gene

lncRNA

Aliases for ARNTL2-AS1 Gene

External Ids for ARNTL2-AS1 Gene

Previous GeneCards Identifiers for ARNTL2-AS1 Gene

  • GC12M027543

Summaries for ARNTL2-AS1 Gene

GeneCards Summary for ARNTL2-AS1 Gene

ARNTL2-AS1 (ARNTL2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ARNTL2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ARNTL2-AS1 Gene

Genomics for ARNTL2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ARNTL2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ARNTL2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ARNTL2-AS1 Gene

Latest Assembly
chr12:27,389,788-27,460,781
(GRCh38/hg38)
Size:
70,994 bases
Orientation:
Minus strand

Previous Assembly
chr12:27,542,722-27,599,567
(GRCh37/hg19 by Entrez Gene)
Size:
56,846 bases
Orientation:
Minus strand

chr12:27,542,722-27,599,558
(GRCh37/hg19 by Ensembl)
Size:
56,837 bases
Orientation:
Minus strand

Genomic View for ARNTL2-AS1 Gene

Genes around ARNTL2-AS1 on UCSC Golden Path with GeneCards custom track
ARNTL2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ARNTL2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARNTL2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARNTL2-AS1 Gene

Proteins for ARNTL2-AS1 Gene

Post-translational modifications for ARNTL2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARNTL2-AS1 Gene

Domains & Families for ARNTL2-AS1 Gene

Gene Families for ARNTL2-AS1 Gene

genes like me logo Genes that share domains with ARNTL2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ARNTL2-AS1 Gene

Function for ARNTL2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARNTL2-AS1 Gene

Localization for ARNTL2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARNTL2-AS1 Gene

Pathways & Interactions for ARNTL2-AS1 Gene

PathCards logo

SuperPathways for ARNTL2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ARNTL2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ARNTL2-AS1 Gene

Drugs & Compounds for ARNTL2-AS1 Gene

No Compound Related Data Available

Transcripts for ARNTL2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ARNTL2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000049E7B2_9606 lncRNA 808 4

Ensembl: ENST00000500498 (view in UCSC) ,

LncBook: HSALNT0187048,

LNCipedia: ARNTL2-AS1:4,

NONCODE: NONHSAT027434.2,

URS000075C2DD_9606 lncRNA 813 1

RefSeq: NR_109975,

URS00008BB257_9606 lncRNA 969 3

LncBook: HSALNT0187051,

LNCipedia: ARNTL2-AS1:1,

NONCODE: NONHSAT027435.2,

URS0000D57220_9606 lncRNA 3446 2

LncBook: HSALNT0187057,

LNCipedia: ARNTL2-AS1:6,

URS0000D5B743_9606 lncRNA 3421 2

LncBook: HSALNT0187056,

LNCipedia: ARNTL2-AS1:5,

ARNTL2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ARNTL2-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ARNTL2-AS1 Gene

No ASD Table

Relevant External Links for ARNTL2-AS1 Gene

GeneLoc Exon Structure for
ARNTL2-AS1

Expression for ARNTL2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ARNTL2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ARNTL2-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x7.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ARNTL2-AS1

genes like me logo Genes that share expression patterns with ARNTL2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARNTL2-AS1 Gene

Orthologs for ARNTL2-AS1 Gene

Evolution for ARNTL2-AS1 Gene

ENSEMBL:
Gene Tree for ARNTL2-AS1 (if available)
TreeFam:
Gene Tree for ARNTL2-AS1 (if available)

No data available for Orthologs for ARNTL2-AS1 Gene

Paralogs for ARNTL2-AS1 Gene

No data available for Paralogs for ARNTL2-AS1 Gene

Variants for ARNTL2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ARNTL2-AS1 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
rs74988383 Benign: not provided 27,390,208(-) G/C
NM_020183.5(ARNTL2):c.888G>C (p.Glu296Asp)
MISSENSE

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ARNTL2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for ARNTL2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1406n100 CNV gain 25217958
dgv2417n54 CNV gain 21841781
dgv271e199 CNV deletion 23128226
esv2745664 CNV deletion 23290073
esv3628933 CNV gain 21293372
nsv436825 CNV insertion 17901297
nsv521872 CNV gain 19592680
nsv650 CNV insertion 18451855
nsv832357 CNV gain 17160897

Additional Variant Information for ARNTL2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARNTL2-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARNTL2-AS1 Gene

Disorders for ARNTL2-AS1 Gene

Additional Disease Information for ARNTL2-AS1

No disorders were found for ARNTL2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARNTL2-AS1 Gene

Publications for ARNTL2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for ARNTL2-AS1 Gene

Sources for ARNTL2-AS1 Gene