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Aliases for ARMC2-AS1 Gene

Subcategory (RNA class) for ARMC2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ARMC2-AS1 Gene

  • ARMC2 Antisense RNA 1 2 3 5
  • ARMC2 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for ARMC2-AS1 Gene

Previous GeneCards Identifiers for ARMC2-AS1 Gene

  • GC06M109245

Summaries for ARMC2-AS1 Gene

GeneCards Summary for ARMC2-AS1 Gene

ARMC2-AS1 (ARMC2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ARMC2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARMC2-AS1 Gene

Genomics for ARMC2-AS1 Gene

GeneHancer (GH) Regulatory Elements for ARMC2-AS1 Gene

Promoters and enhancers for ARMC2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J108925 Enhancer 0.2 FANTOM5 650.7 -1.1 -1126 0 ARMC2-AS1 PIR34191 ARMC2
GH06J109006 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.5 -85.0 -84989 5 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 ZNF2 IRF4 YY1 POLR2B ZNF213 GC06P109009 SESN1 RNU6-653P ARMC2-AS1 ENSG00000271730
GH06J108895 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +27.6 27633 2.7 FOXA2 KLF17 RAD21 ZEB1 KLF7 FOS RUNX3 SP3 ZNF280D RXRA ARMC2 RNU6-653P ARMC2-AS1 OSTM1-AS1 FOXO3 CD164 ATP5MFP2 RPS12P13
GH06J108871 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.4 +50.4 50397 4.1 BMI1 BATF ZIC2 IRF4 NFATC1 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 ARMC2 RNU6-653P ARMC2-AS1 ZBTB24 SESN1 RPS12P13 ATP5MFP2
GH06J108941 Enhancer 1.2 Ensembl ENCODE dbSUPER 12 -21.5 -21483 7.3 PKNOX1 ATF1 NFIB NEUROD1 BMI1 RFX5 SCRT2 FOS RCOR1 GATAD2B SMPD2 ARMC2-AS1 ZBTB24 RNU6-653P LOC105377929 ARMC2 AFG1L PIR34191
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ARMC2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARMC2-AS1 Gene

Genomic Locations for ARMC2-AS1 Gene
chr6:108,908,140-108,924,103
(GRCh38/hg38)
Size:
15,964 bases
Orientation:
Minus strand
chr6:109,244,179-109,245,306
(GRCh37/hg19)
Size:
1,128 bases
Orientation:
Minus strand

Genomic View for ARMC2-AS1 Gene

Genes around ARMC2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARMC2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARMC2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARMC2-AS1 Gene

Proteins for ARMC2-AS1 Gene

Post-translational modifications for ARMC2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARMC2-AS1 Gene

Domains & Families for ARMC2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARMC2-AS1 Gene

Function for ARMC2-AS1 Gene

Phenotypes From GWAS Catalog for ARMC2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARMC2-AS1 Gene

Localization for ARMC2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARMC2-AS1 Gene

Pathways & Interactions for ARMC2-AS1 Gene

SuperPathways for ARMC2-AS1 Gene

No Data Available

Interacting Proteins for ARMC2-AS1 Gene

Gene Ontology (GO) - Biological Process for ARMC2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARMC2-AS1 Gene

Drugs & Compounds for ARMC2-AS1 Gene

No Compound Related Data Available

Transcripts for ARMC2-AS1 Gene

mRNA/cDNA for ARMC2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ARMC2-AS1 Gene

No ASD Table

Relevant External Links for ARMC2-AS1 Gene

GeneLoc Exon Structure for
ARMC2-AS1
ECgene alternative splicing isoforms for
ARMC2-AS1

Expression for ARMC2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARMC2-AS1 Gene

genes like me logo Genes that share expression patterns with ARMC2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARMC2-AS1 Gene

Orthologs for ARMC2-AS1 Gene

Evolution for ARMC2-AS1 Gene

ENSEMBL:
Gene Tree for ARMC2-AS1 (if available)
TreeFam:
Gene Tree for ARMC2-AS1 (if available)

No data available for Orthologs for ARMC2-AS1 Gene

Paralogs for ARMC2-AS1 Gene

No data available for Paralogs for ARMC2-AS1 Gene

Variants for ARMC2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARMC2-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000359487 -- 108,924,544(-) G/C upstream_transcript_variant
rs1000415174 -- 108,925,372(-) C/T upstream_transcript_variant
rs1000519027 -- 108,912,160(-) T/A/C intron_variant
rs1000550117 -- 108,911,665(-) A/C intron_variant
rs1000807670 -- 108,918,929(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ARMC2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3610330 CNV loss 21293372
nsv830768 CNV gain 17160897

Additional Variant Information for ARMC2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARMC2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARMC2-AS1 Gene

Disorders for ARMC2-AS1 Gene

Additional Disease Information for ARMC2-AS1

No disorders were found for ARMC2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARMC2-AS1 Gene

Publications for ARMC2-AS1 Gene

No publications were found for ARMC2-AS1 Gene.

Products for ARMC2-AS1 Gene

Sources for ARMC2-AS1 Gene

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