Aliases for ARLNC1 Gene

Data sources for ARLNC1 Gene:

Subcategory (RNA class) for ARLNC1 Gene

lncRNA

Aliases for ARLNC1 Gene

External Ids for ARLNC1 Gene

Previous HGNC Symbols for ARLNC1 Gene

  • LINC02170

Summaries for ARLNC1 Gene

GeneCards Summary for ARLNC1 Gene

ARLNC1 (Androgen Receptor Regulated Long Noncoding RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ARLNC1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ARLNC1 Gene

Genomics for ARLNC1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ARLNC1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J080892 Promoter 0.6 EPDnew 250.7 +0.1 101 0.1 POLR2A ZBTB33 TAF1 SP1 CEBPB ARLNC1 piR-50444-156 CDYL2 CENPN ENSG00000286221
GH16J080882 Enhancer 0.8 ENCODE 0.4 +9.2 9239 1.4 CEBPA THAP11 FOXA2 SMAD4 RXRA RARA TEAD3 ZBTB33 THRB BCL6 ARLNC1 HSALNG0112954 piR-50444-156 CDYL2 CENPN ENSG00000286221
GH16J080899 Enhancer 0.8 ENCODE dbSUPER 0.4 -7.7 -7737 1.3 RXRA FOXA2 JUND FOXA1 NFYC RAD21 MAX SP1 HNF4A ZFP69B CDYL2 ARLNC1 HSALNG0112955 CENPN ENSG00000286221
GH16J080835 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.2 +55.0 55031 3.5 FEZF1 DEK BRCA1 CEBPB CUX1 MAX EP300 RAD21 CTBP1 RFX5 HSALNG0112952 CDYL2 HSALNG0112954 ARLNC1 CENPN ENSG00000286221
GH16J080846 Enhancer 0.8 ENCODE dbSUPER 0.3 +46.1 46051 0.9 FEZF1 BRCA1 CEBPB MAX EP300 STAT3 BCL6 TBP TCF7L2 USF2 HSALNG0112952 HSALNG0112954 CDYL2 ARLNC1 CENPN ENSG00000286221
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ARLNC1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ARLNC1 Gene

Latest Assembly
chr16:80,826,074-80,892,718
(GRCh38/hg38)
Size:
66,645 bases
Orientation:
Minus strand

Previous Assembly
chr16:80,862,632-80,926,493
(GRCh37/hg19 by Entrez Gene)
Size:
63,862 bases
Orientation:
Minus strand

chr16:80,862,632-80,926,492
(GRCh37/hg19 by Ensembl)
Size:
63,861 bases
Orientation:
Minus strand

Genomic View for ARLNC1 Gene

Genes around ARLNC1 on UCSC Golden Path with GeneCards custom track
ARLNC1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ARLNC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARLNC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARLNC1 Gene

Proteins for ARLNC1 Gene

Post-translational modifications for ARLNC1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARLNC1 Gene

Domains & Families for ARLNC1 Gene

Gene Families for ARLNC1 Gene

genes like me logo Genes that share domains with ARLNC1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ARLNC1 Gene

Function for ARLNC1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARLNC1 Gene

Localization for ARLNC1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARLNC1 Gene

Pathways & Interactions for ARLNC1 Gene

PathCards logo

SuperPathways for ARLNC1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ARLNC1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ARLNC1 Gene

Drugs & Compounds for ARLNC1 Gene

No Compound Related Data Available

Transcripts for ARLNC1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ARLNC1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000339D54_9606 lncRNA 465 4

Ensembl: ENST00000569356 (view in UCSC) ,

LncBook: HSALNT0234178,

LNCipedia: ARLNC1:15,

NONCODE: NONHSAT143912.2,

URS000024A08F_9606 lncRNA 555 3

Ensembl: ENST00000561519 (view in UCSC) ,

LNCipedia: ARLNC1:13,

NONCODE: NONHSAT143913.2,

URS00005F7322_9606 lncRNA 505 3

Ensembl: ENST00000563626 (view in UCSC) ,

LNCipedia: ARLNC1:12,

NONCODE: NONHSAT143914.2,

URS0000E78811_9606 lncRNA 2756 1

Ensembl: ENST00000652422 (view in UCSC) ,

URS0000E6DE90_9606 lncRNA 2385 1

Ensembl: ENST00000652701 (view in UCSC) ,

ARLNC1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ARLNC1 Gene

8 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ARLNC1 Gene

No ASD Table

Relevant External Links for ARLNC1 Gene

GeneLoc Exon Structure for
ARLNC1

Expression for ARLNC1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ARLNC1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARLNC1 Gene

Orthologs for ARLNC1 Gene

Evolution for ARLNC1 Gene

ENSEMBL:
Gene Tree for ARLNC1 (if available)
TreeFam:
Gene Tree for ARLNC1 (if available)

No data available for Orthologs for ARLNC1 Gene

Paralogs for ARLNC1 Gene

No data available for Paralogs for ARLNC1 Gene

Variants for ARLNC1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ARLNC1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for ARLNC1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARLNC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARLNC1 Gene

Disorders for ARLNC1 Gene

Additional Disease Information for ARLNC1

No disorders were found for ARLNC1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARLNC1 Gene

Publications for ARLNC1 Gene

  1. Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression. (PMID: 29808028) Zhang Y … Chinnaiyan AM (Nature genetics 2018) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for ARLNC1 Gene

Sources for ARLNC1 Gene